BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0060.0005.p
         (179 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25115 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase     196   2e-50
L160442 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase    166   1e-41
STM0206 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ...   103   1e-22

>L25115 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase
          Length = 311

 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 13/157 (8%), Positives = 34/157 (21%), Gaps = 1/157 (0%)

Query: 23  GAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKII 82
            +   T       L + +         +    I   +++D     +     K +      
Sbjct: 28  SSVTITLVLVGLFLSVILNTSKISNGIENNVRIVAYMKLDVHDQETKIQDPKDNKKTINN 87

Query: 83  KDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAY 142
            D     +    +     ++     + L E+ +     +  +      P      +EA  
Sbjct: 88  PDHLKIYDSIKKVPNVKTVEFSSKEAQLKELTKAL-GNNWNLFKGDANPLYDAYIVEADK 146

Query: 143 TGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179
              V      +       +          L       
Sbjct: 147 PANVKSVTSKISKLSGIEKATYGGANTAKLFQIAQGI 183


>L160442 [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase
          Length = 180

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 113/154 (73%)

Query: 26  LSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKIIKDL 85
           +S +Y G+ PLV+ +LKG+ +F  DL+K +++  E+DFM V+SYG    SSG V+I+KDL
Sbjct: 26  VSRDYEGKNPLVVGILKGSIMFTVDLLKELSIDAEVDFMDVTSYGYGISSSGEVRILKDL 85

Query: 86  DASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAYTGF 145
                GRD+LIVEDIID+G TL YL ++L GR A SV +++L DKP+GR V+++A Y GF
Sbjct: 86  STVAHGRDILIVEDIIDTGNTLLYLKKLLTGRQAHSVKIISLLDKPSGRKVDIDADYVGF 145

Query: 146 VIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179
            +PD F+VGYG+DYAE+YR LPY+G+   E   K
Sbjct: 146 EVPDAFIVGYGIDYAERYRQLPYIGIFNEEFLIK 179


>STM0206 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic
           component
          Length = 266

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 2/151 (1%), Positives = 19/151 (12%), Gaps = 5/151 (3%)

Query: 23  GAQLSTEYAGRTPLV--ICVLKGAFIFMADL-VKVITVPVEMDFMAVSSYGASTKSSGVV 79
                                    + ++                         +   + 
Sbjct: 20  LYAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPEAQKIEQVSTWQGM-NLERIVALK 78

Query: 80  KIIKDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLE 139
             +            +     +   +     + + Q  +                    +
Sbjct: 79  PDLVVAWRGGNAERQVNQLTSLGIKVMWVDAVTIEQIADTLRQLAAWSPQPEK-AQQAAQ 137

Query: 140 AAYTGFVIPDEFVVGYGLDYAEQYRNLPYVG 170
                +   +    G           +  + 
Sbjct: 138 TLLNEYAALNAEYAGKAKKRVFLQFGMNPLF 168


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,485,000
Number of extensions: 421360
Number of successful extensions: 1174
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 79
Effective length of database: 26,845,031
Effective search space: 2120757449
Effective search space used: 2120757449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)