BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0060.0001.p
         (69 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0092 [EH] COG0115 Branched-chain amino acid aminotransferase/4...    66   1e-11
BS_pabC [EH] COG0115 Branched-chain amino acid aminotransferase/...    65   2e-11

>BH0092 [EH] COG0115 Branched-chain amino acid
          aminotransferase/4-amino-4-deoxychorismate lyase
          Length = 295

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 3  YIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          Y+  N ++V  + A+IS  DHG++YG+GLFETFR Y+G PFLL  H  RL
Sbjct: 2  YMYVNDKLVKEEEAIISPFDHGYMYGLGLFETFRLYEGHPFLLDDHFVRL 51


>BS_pabC [EH] COG0115 Branched-chain amino acid
          aminotransferase/4-amino-4-deoxychorismate lyase
          Length = 269

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 9/49 (18%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
             N    ++      A   G                    +QR  D  
Sbjct: 2  FLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDAC 50


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.331    0.148    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,071,882
Number of extensions: 145616
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 38,378,431
Length adjustment: 41
Effective length of query: 28
Effective length of database: 33,649,737
Effective search space: 942192636
Effective search space used: 942192636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)