BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0004.p (182 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0330 [J] COG1670 Acetyltransferases, including N-acetylases of... 161 6e-40 BS_ydaF [J] COG1670 Acetyltransferases, including N-acetylases o... 125 3e-29 PA3248 [J] COG1670 Acetyltransferases, including N-acetylases of... 103 2e-22 rimL [J] COG1670 Acetyltransferases, including N-acetylases of r... 88 9e-18 STM1611 [J] COG1670 Acetyltransferases, including N-acetylases o... 84 1e-16 >SA0330 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 181 Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 105/178 (58%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF ++E++ LK+L +F LV RSR LR+WLPWVD + + FIK + Q Sbjct: 1 MFGMKVNEQITLKILEAHDTEALFNLVNRSRNSLREWLPWVDATEQPSDTRAFIKRGLLQ 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 ++ GF GIW L G+IG HEI+ +R +GY+L + +EG G MT A + Y Sbjct: 61 FADGNGFQCGIWYEGTLVGVIGLHEINHMHRKTSLGYYLDKQFEGHGIMTQAVEALIKYC 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEW 178 E+DLNR+EI A N SRAIPERLGF EG++R E L Y + +Y LL+SE+ Sbjct: 121 FEELDLNRIEISAAVNNEKSRAIPERLGFTREGMLRDNELLNGIYSSSYIYSLLKSEY 178 >BS_ydaF [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 183 Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 1/180 (0%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTE-QAHLETFIKNSVR 59 MF ++E + ++LL P+ A + L+ +++ RL +WL + + + + ET I + R Sbjct: 1 MFTCKVNEHITIRLLEPKDAERLAELIIQNQQRLGKWLFFAENPSSADTYRETIIPDWRR 60 Query: 60 QGSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDY 119 Q ++ G AG+ L G+I H +D NR IGYW+ + +EGKG +T+ACR + Y Sbjct: 61 QYADLNGIEAGLLYDGSLCGMISLHNLDQVNRKAEIGYWIAKEFEGKGIITAACRKLITY 120 Query: 120 ALLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEWK 179 A E++LNRV I A GN SRA+PER+GF+ EG R + + + Y LL+ EW+ Sbjct: 121 AFEELELNRVAICAAVGNEKSRAVPERIGFLEEGKARDGLYVNGMHHDLVYYSLLKREWE 180 >PA3248 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 183 Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 84/178 (47%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF I +L L+LL A +F LV + L W+PWV FI R Sbjct: 1 MFILPISSDLHLELLDQPRAEELFRLVRANSEHLAPWMPWVPLTQSVDDTRRFIGEGQRL 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 +E GI L G+I H+ +RS IGYWL +G+G + A ++ Sbjct: 61 WAERRSCRCGIVESGCLVGVIDLHDFTEDSRSASIGYWLAASAQGRGLLARALGKTIELG 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEW 178 L D R+ IRC+T N S+ ER GF +GVIR E + +HA+Y LLRSEW Sbjct: 121 FLGYDRQRLVIRCSTENLRSQRAAERQGFRRDGVIRANEIIAGRAHDHAIYTLLRSEW 178 >rimL [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 179 Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 84/167 (50%) Query: 6 IDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQGSENG 65 + E L+L + H +P++ L+ +++ L+Q L W V + ++ +V Sbjct: 7 VSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGY 66 Query: 66 GFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYALLEMD 125 I+ +EL G+I ++ I+ N++ IGYWL E ++G+G ++ A + + + + Sbjct: 67 AKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDESHQGQGIISQALQALIHHYAQSGE 126 Query: 126 LNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYG 172 L R I+C N S + R GF+ EG ++QAE L Y + +Y Sbjct: 127 LRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAEFLNDAYDDVNLYA 173 >STM1611 [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins Length = 179 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%) Query: 6 IDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQGSENG 65 + L+L+ H + LV +++A L+Q L W VT Q ++ ++ Sbjct: 7 VSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQYVTSQEETRKHVQGNILLHQRGY 66 Query: 66 GFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYALLEMD 125 I+ + E+AG++ ++ I+ N++ IGYWL E ++G+G M+ + + + + D Sbjct: 67 AKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGD 126 Query: 126 LNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYG 172 + R I+C N+ S A+ R F EG ++QAE L Y + +Y Sbjct: 127 IRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYA 173 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,521,602 Number of extensions: 634771 Number of successful extensions: 976 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 979 Number of HSP's successfully gapped: 35 Length of query: 182 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 82 Effective length of database: 26,845,031 Effective search space: 2201292542 Effective search space used: 2201292542 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 112 (47.8 bits)