BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0018.p (486 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_katA [P] COG0753 Catalase 867 0.0 jhp0809 [P] COG0753 Catalase 566 e-161 HP0875 [P] COG0753 Catalase 561 e-160 PA4236 [P] COG0753 Catalase 546 e-155 SMc00819 [P] COG0753 Catalase 510 e-144 >BS_katA [P] COG0753 Catalase Length = 483 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/480 (86%), Positives = 439/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+G VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA+TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M G+NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH DHYTQ Sbjct: 362 NNYQRDGQMRFGDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >jhp0809 [P] COG0753 Catalase Length = 505 Score = 566 bits (1458), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/478 (58%), Positives = 350/478 (73%), Gaps = 8/478 (1%) Query: 7 KLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYF 66 K TT++GAPV D+ N +TAG RGP LLQ LEKLA F+RER+PERVVHAKG+GA+G F Sbjct: 7 KQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTF 66 Query: 67 EVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDL 126 VT+D++KYTKA S+VGK+T F RFSTVAGE GSAD VRDPRGFA+K+YTEEGN+DL Sbjct: 67 TVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGEKGSADAVRDPRGFAMKYYTEEGNWDL 126 Query: 127 VGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRGI 186 VGNNTPVFFIRDAIKFPDFIHTQKR PQT+L NP+ VWDFWS PESL+QVT +MSDRGI Sbjct: 127 VGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNPDMVWDFWSNVPESLYQVTWVMSDRGI 186 Query: 187 PATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHTEDL 246 P + RHM GFGSHTF +NA G WVK+HF+T QGVK+L + AA++ +PD + DL Sbjct: 187 PKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKHLTNEEAAEVRKYDPDSNQRDL 246 Query: 247 FNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENY 306 F+AI GDFP W++ +Q+MP EDA YRF PFDVTK+W +DYPL+EVG + L++NPENY Sbjct: 247 FDAIAGGDFPKWKMSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENY 306 Query: 307 FAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEVNNN 366 FAEVEQA F+P + VPGI SPD+MLQGRLF+YGD HRYR+G N+ Q+P+NRP +++ Sbjct: 307 FAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSS 366 Query: 367 QRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFD---VSGKADSVPYDH----DDH 419 RDG M +G G Y P+S G E + + F+ + + + +D+ D+ Sbjct: 367 SRDGYMQNGYYGSLQN-YTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDY 425 Query: 420 YTQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGL 477 YTQPGD YR L +E+ RL I G++ V EI +Q+ HF KADP++ + V L Sbjct: 426 YTQPGDYYRSLPADEKERLYDTIGGSLAHVTHKEIVDKQLEHFKKADPKYAEGVKKAL 483 >HP0875 [P] COG0753 Catalase Length = 505 Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/478 (58%), Positives = 345/478 (72%), Gaps = 8/478 (1%) Query: 7 KLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYF 66 K TT++GAPV D+ N +TAG RGP LLQ LEKLA F+RER+PERVVHAKG+GA+G F Sbjct: 7 KQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTF 66 Query: 67 EVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDL 126 VT+D++KYTKA S+VGK+T F RFSTVAGE GSAD VRDPRGFA+K+YTEEGN+DL Sbjct: 67 TVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDL 126 Query: 127 VGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRGI 186 VGNNTPVFFIRDAIKFPDFIHTQKR PQT+L N + VWDFWS PESL+QVT +MSDRGI Sbjct: 127 VGNNTPVFFIRDAIKFPDFIHTQKRDPQTNLPNHDMVWDFWSNVPESLYQVTWVMSDRGI 186 Query: 187 PATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHTEDL 246 P + RHM GFGSHTF +NA G WVK+HF T QGVK+L + AA++ +PD + DL Sbjct: 187 PKSFRHMDGFGSHTFSLINAKGERFWVKFHFHTMQGVKHLTNEEAAEVRKYDPDSNQRDL 246 Query: 247 FNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENY 306 FNAI +GDFP W+L +Q+MP EDA YRF PFDVTK+W +DYPL+EVG + L++NPENY Sbjct: 247 FNAIARGDFPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENY 306 Query: 307 FAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEVNNN 366 FAEVEQA FSP + VPGI SPD+MLQGRLF+YGD HRYR+G N+ Q+P+N+P +++ Sbjct: 307 FAEVEQAAFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSS 366 Query: 367 QRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPY-------DHDDH 419 RDG M +G G Y P+S G E + + F+++ D D+ Sbjct: 367 SRDGYMQNGYYGSLQN-YTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRADDSDY 425 Query: 420 YTQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGL 477 YTQPGD YR L +E+ RL I ++ V EI +Q+ HF KADP++ + V L Sbjct: 426 YTQPGDYYRSLPADEKERLHDTIGESLAHVTHKEIVDKQLEHFKKADPKYAEGVKKAL 483 >PA4236 [P] COG0753 Catalase Length = 482 Score = 546 bits (1407), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/483 (55%), Positives = 347/483 (71%), Gaps = 7/483 (1%) Query: 3 ESPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGA 62 E +LTT+ GAPV DNQN TAG RGP LLQDV LEKLAHF+RE +PER +HAKG+ A Sbjct: 2 EEKTRLTTAAGAPVVDNQNVQTAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSAA 61 Query: 63 HGYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEG 122 +G F VT D++ YT+A S+VGK+T MF+RFSTVAGE G+AD RD RGF+++FYTE+G Sbjct: 62 YGTFTVTHDITPYTRAKIFSQVGKKTDMFLRFSTVAGERGAADAERDIRGFSMRFYTEQG 121 Query: 123 NYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMS 182 N+DLVGNNTPVF++RD +KFPD H KR P+T+L+N WDF+S PESLHQ+TI S Sbjct: 122 NWDLVGNNTPVFYLRDPLKFPDLNHVVKRDPRTNLRNATFKWDFFSHLPESLHQLTIDFS 181 Query: 183 DRGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYH 242 DRG+P + RH+HGFGSHTF ++NA+ WVK+HFKT+QG++NL AA++ ++ + Sbjct: 182 DRGLPKSYRHIHGFGSHTFSFINANNERFWVKFHFKTQQGIENLTNAEAAEVIAQDRESS 241 Query: 243 TEDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRN 302 DL+ +I++GDFP W++YVQIMP ++A TYR++PFD+TKVW DYPLIEVG L+RN Sbjct: 242 QRDLYESIEKGDFPRWKMYVQIMPEKEAATYRYNPFDLTKVWPHGDYPLIEVGFFELNRN 301 Query: 303 PENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAE 362 P+NYFAEVEQA F+P + VPGI SPDKMLQGRLF+YGDAHRYR+G NH+Q+P+N Sbjct: 302 PDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAARCP 361 Query: 363 VNNNQRDGAM-IHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDH---DD 418 RDG M + GNN V YEPNSF E P + G AD ++H DD Sbjct: 362 HQVYHRDGGMRVDGNNAHQRVTYEPNSFNQWQEQPDFSEPPLSLEGAADH--WNHRVDDD 419 Query: 419 HYTQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLG 478 +Y+QP L+ L ++E++ RL NI + V ++I+ RQIG F K DP +G+ VA LG Sbjct: 420 YYSQPAALFHLFTDEQKQRLFANIAEDIRDV-PEQIQRRQIGLFLKVDPAYGKGVADALG 478 Query: 479 LTV 481 L + Sbjct: 479 LKL 481 >SMc00819 [P] COG0753 Catalase Length = 494 Score = 510 bits (1313), Expect = e-144, Method: Compositional matrix adjust. Identities = 263/483 (54%), Positives = 333/483 (68%), Gaps = 11/483 (2%) Query: 1 MSESPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGA 60 M++ P +TT+ GAPV DNQNS+TAG RG +LQD L+EKLAH NRER+PERVVHAKG Sbjct: 1 MTDRPT-ITTTAGAPVPDNQNSLTAGPRGGIMLQDYQLIEKLAHQNRERIPERVVHAKGW 59 Query: 61 GAHGYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTE 120 GA G ++T D+S+YT+A L + G TPM RFSTVAGE G+AD RD RGFA+KFYT+ Sbjct: 60 GAFGSLKITGDISQYTRAKCL-QPGAETPMLARFSTVAGEQGAADHERDVRGFALKFYTD 118 Query: 121 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTIL 180 EGN+DLVGNNTPVFFIRD KFPDFIHTQKRHP+T+L++ A+WD+WSLSPESLHQVTIL Sbjct: 119 EGNWDLVGNNTPVFFIRDPYKFPDFIHTQKRHPKTNLRSATAMWDYWSLSPESLHQVTIL 178 Query: 181 MSDRGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPD 240 MSDRG+P T HM+G+GSHT+ + N G WVK+HFKT+QG K + + G+ + Sbjct: 179 MSDRGLPQTPMHMNGYGSHTYSFWNDAGERYWVKFHFKTQQGHKFFTNEEGEAVIGKTRE 238 Query: 241 YHTEDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLD 300 + E LF AI+ G+FP W + VQIMP D + ++PFD+TKVW DYP +E+G + L+ Sbjct: 239 GYQESLFYAIENGEFPRWTVQVQIMPELDVEKTPYNPFDLTKVWPHADYPPVEIGVLELN 298 Query: 301 RNPENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPV 360 RNPENYFAE+E A FSP + VPGI SPDK+LQ R+F+Y DAHRYR+G ++ +P+N+P Sbjct: 299 RNPENYFAEIENAAFSPSNIVPGIGFSPDKVLQARIFSYADAHRYRLGTHYEHIPVNQPR 358 Query: 361 AEVNNNQRDGAM-IHG--NNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDH- 416 V++ RDG M +G G YYEPNSF G AE P K + G D YDH Sbjct: 359 CPVHHYHRDGQMNTYGGIRTGNPDAYYEPNSFNGPAEQPLAKEPPLRIDG--DMSRYDHR 416 Query: 417 --DDHYTQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVA 474 +D Y Q L+ L E +++RL NI AM V EI RQ+ HF + PE+ V Sbjct: 417 VGNDDYVQVRALFGLFDEGQKSRLFSNIAAAMGGV-PGEIIERQLIHFARVHPEYEAGVR 475 Query: 475 AGL 477 L Sbjct: 476 QAL 478 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 40,256,856 Number of extensions: 1813746 Number of successful extensions: 3065 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 3022 Number of HSP's successfully gapped: 16 Length of query: 486 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 376 Effective length of database: 25,691,691 Effective search space: 9660075816 Effective search space used: 9660075816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 118 (50.1 bits)