BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0013.p (117 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L35675 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon... 134 2e-32 SMa0316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuco... 98 3e-21 MTH234 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon... 91 4e-19 MA0409 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon... 87 4e-18 PA4486 [S] COG0599 Uncharacterized homolog of gamma-carboxymucon... 78 3e-15 >L35675 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Length = 122 Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 60/109 (55%), Positives = 80/109 (73%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEP 61 ++DG V +SL+D++PDL +++FAFG IY R L+ K R+LITI++L GGCE Sbjct: 13 KIDGAAAEVVFDSLKDLAPDLNNLMLKFAFGTIYERGVLNFKDRELITITSLLTQGGCEN 72 Query: 62 QLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEER 110 QL VHI A+LNVGL+ +EI+E +H PY GFPRVLNA FVAKE+F +R Sbjct: 73 QLRVHIQASLNVGLTQEEIIETFIHYAPYVGFPRVLNAIFVAKEIFTDR 121 >SMa0316 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Length = 420 Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 5/114 (4%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALG--GC 59 E G GA V++S +D++P LG+ ++ +GDI+ R LD K R+L ISAL A G Sbjct: 290 ETSGGSGADVVDSFKDVAPGLGRLIVAHCYGDIFCRPALDPKVRELGAISALAAQGTVAA 349 Query: 60 EPQLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKE---VFEER 110 E L VHI+AALN+G +P+EIVE L + PYAG+P + A +A + +F+E+ Sbjct: 350 EKPLGVHIDAALNLGATPEEIVETLFNIIPYAGYPLIEKALLIAHDRISLFDEK 403 Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 58/99 (58%) Query: 12 IESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEPQLTVHINAAL 71 + L S DL +F I++ +GD+ SR+GLDL+ RQ++T + L A G + QL+ H+ L Sbjct: 41 VSQLASFSEDLARFTIQYPYGDVLSRDGLDLRTRQILTAATLLAHGSAQSQLSFHLYGLL 100 Query: 72 NVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEER 110 N G + ++V+ L GFP +NA + +++ +R Sbjct: 101 NAGGTRADVVDLLFISAGLLGFPTAINAVPIVRDILADR 139 >MTH234 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Length = 337 Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 4/99 (4%), Positives = 20/99 (20%), Gaps = 1/99 (1%) Query: 11 VIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEPQLTVHINAA 70 P + + + G + + Q + + + + Sbjct: 22 RETPRVKSWPQVDEPGLLALAGYKAGMTHVMMVDNQKNSPTEGMEVST-PVTILEVPPLT 80 Query: 71 LNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEE 109 + + ++ L + ++ Sbjct: 81 VMAVRTYEKTSRGLKTLGEVLATETKDDLRRKLTPPADD 119 >MA0409 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Length = 250 Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Query: 1 MEVDGTGGAKVIESLRDISPD----LGQFVIEFAFGDIYSREGLDLKQRQLITISALTAL 56 +EV +I+ + + +P+ + +++ FGD Y+R+GLD+K R+L+T S + AL Sbjct: 138 LEVQKEIFGDIIDKMYEAAPENQIHIQKYLSANCFGDYYTRKGLDVKTRELLTFSMILAL 197 Query: 57 GGCEPQLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEE 109 GGCEPQL HI LNVG K ++ + PY G+PR LNA EV E Sbjct: 198 GGCEPQLKGHIQGNLNVGNDKKTLLSTVTQLLPYIGYPRTLNAIACLNEVIPE 250 Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 14 SLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEPQLTVHINAALNV 73 +L+ P+L + FAF ++ S LD K R ++ + +L A + V + ALNV Sbjct: 21 TLKVTDPELIEVFDNFAFDEVISYGNLDTKTRMMVILGSLIA-SQTLSEYKVMLGGALNV 79 Query: 74 GLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEERGLAVP 115 G++P E+ E + PY G ++ + E+ E RG+ +P Sbjct: 80 GVTPIEVKEIVYQSVPYVGIAKIFDFIHATNEILESRGIELP 121 >PA4486 [S] COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Length = 128 Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 1/87 (1%) Query: 22 LGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEPQLTVHINAALNVGLSPKEIV 81 L FV E A+G +++RE L K R LIT++ALTAL C +L H+ ALN G + +EI Sbjct: 35 LQDFVNEHAWGSVWAREALPRKTRSLITLAALTALK-CPQELKGHVRGALNNGCTVEEIR 93 Query: 82 EALLHCTPYAGFPRVLNATFVAKEVFE 108 EALLHC YAG P ++A A+E + Sbjct: 94 EALLHCAVYAGVPAAIDAFRAAQEAID 120 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 8,645,021 Number of extensions: 294226 Number of successful extensions: 547 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 528 Number of HSP's successfully gapped: 25 Length of query: 117 Length of database: 38,378,431 Length adjustment: 84 Effective length of query: 33 Effective length of database: 28,690,375 Effective search space: 946782375 Effective search space used: 946782375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 109 (46.6 bits)