BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0011.p
         (82 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1622 [K] COG0789 Predicted transcriptional regulators               57   6e-09
CAC3507 [K] COG0789 Predicted transcriptional regulators               57   7e-09

>lin1622 [K] COG0789 Predicted transcriptional regulators
          Length = 145

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 47/72 (65%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           + W+  +V++RE+ +PIRE++ Y  L  +GP T+ ER  ++  ++  VE +M+ +  +L+
Sbjct: 46  IEWLYMIVLMREVGVPIREIRSYIQLLLKGPETIPERYQLVTQYKQSVEEKMKAMQTSLK 105

Query: 61  KIAGKIKYYKEM 72
            +  K+ +Y+EM
Sbjct: 106 WLGAKVNFYQEM 117


>CAC3507 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           + W+ FL+ ++   +P+ E+++YS+L  QG  T+ ER  ML  HR RVE ++  L   L 
Sbjct: 48  IEWIHFLIKVKNTGMPLNELQKYSELMAQGNPTLPEREKMLLQHRKRVENEISDLEITLT 107

Query: 61  KIAGKIKYYKEMEEE 75
           KI  K+  Y  + +E
Sbjct: 108 KIDEKLDRYHHLMQE 122


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,211,940
Number of extensions: 170089
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 38,378,431
Length adjustment: 52
Effective length of query: 30
Effective length of database: 32,381,063
Effective search space: 971431890
Effective search space used: 971431890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)