BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0010.p (255 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0408 [K] COG0789 Predicted transcriptional regulators 177 2e-44 lin0530 [K] COG0789 Predicted transcriptional regulators 175 6e-44 BS_mta [K] COG0789 Predicted transcriptional regulators 159 4e-39 CAC3475 [K] COG0789 Predicted transcriptional regulators 143 2e-34 SP0739 [K] COG0789 Predicted transcriptional regulators 132 5e-31 >BH0408 [K] COG0789 Predicted transcriptional regulators Length = 255 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 13/256 (5%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 M V+++ L G S RTL +YDEIG+L P +GYR+Y ++ LQQILF++ELG Sbjct: 1 MAMKVKEVAELVGTSVRTLHHYDEIGLLIPDETTEAGYRLYSDDNLEMLQQILFFKELGF 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 SL+ IKE+V +P+FD AL H LL+++ +++ ++ ++KT+ +G I M+NEEKF Sbjct: 61 SLKQIKEIVYSPTFDRLEALSLHRNMLLEKRSRIDQMVETIDKTIKHLKGEIHMTNEEKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 AGF D + Y QE RE++G++AV++SN +L +T+E+ A+ + +++ L + Sbjct: 121 AGF-----DFSHNPYEQEARERWGDEAVDRSNEKLGRLTKEEQQALGERMNQIYRRLAE- 174 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDT----YSKEAHAGVAQMYVDDERFTAYYDKTRP 236 M P S AQ+A + W F + Y+ EA G+ QMYV+DERFT D+ Sbjct: 175 MRHLSPQSQAAQEAI---KDWYEFLNNNFGHHYTLEAFKGLGQMYVEDERFTQNIDQFGE 231 Query: 237 GTAKFLRDAVHVYAGT 252 G A F+ A+ + G+ Sbjct: 232 GLALFMSKAMAAFVGS 247 >lin0530 [K] COG0789 Predicted transcriptional regulators Length = 246 Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 152/247 (61%), Gaps = 7/247 (2%) Query: 5 VQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGLSLEG 64 ++L L GVS RTL +YD+IG+L P + + +GYRIY + +VD+LQQILF++EL L+ Sbjct: 3 TKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKK 62 Query: 65 IKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKFAGFK 124 IK+++ PSFD AL L+++K ++E ++ +++T+ +G I M+NEEKF GF Sbjct: 63 IKQILDDPSFDKEVALSLQRHLLIEKKTRIEAMLETLDQTIKNEKGEIIMTNEEKFTGF- 121 Query: 125 QKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQAMEDG 184 D + Y +E R+ +G+K V ++N ++ NM E++ AI++ F L A+ Sbjct: 122 ----DFSTNPYEEEARKLWGDKVVNQANEKITNMNEKEQMAIKESFDAEFRQL-AAVRKS 176 Query: 185 DPASVLAQKAADLHRQWLT-FHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAKFLR 243 P S AQ+A Q+L H + YS EA AG+ +MYV DERFT D+ G + FL+ Sbjct: 177 APESNEAQQAVHQFFQYLNDTHGNLYSLEAFAGLGEMYVADERFTKNIDQFGDGLSAFLK 236 Query: 244 DAVHVYA 250 +A+ +YA Sbjct: 237 EAMAIYA 243 >BS_mta [K] COG0789 Predicted transcriptional regulators Length = 257 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 153/256 (59%), Gaps = 3/256 (1%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 M+Y V+++ ++GVS RTL +YD I +L P+ + +GYR+Y A+++RLQQILF++E+G Sbjct: 1 MKYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGF 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 L+ IKE++ P+FD AL+ E L+++KQ+++ +I +++TL +G TM+ + F Sbjct: 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVDGGETMNKRDLF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 AG K I++++Q Y E+R+ YG++ E++ +R + + I ++ + Sbjct: 121 AGLSMKDIEEHQQTYADEVRKLYGKEIAEETEKRTSAYSADDWRTIMAEFDSIYRRIAAR 180 Query: 181 MEDGDPASVLAQKAADLHRQWLT-FHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTA 239 M+ G P Q A R + +H+D + + G+ ++Y+ DERFT ++ G A Sbjct: 181 MKHG-PDDAEIQAAVGAFRDHICQYHYDC-TLDIFRGLGEVYITDERFTDSINQYGEGLA 238 Query: 240 KFLRDAVHVYAGTEQD 255 FLR+A+ +Y +++ Sbjct: 239 AFLREAIIIYCDHQEN 254 >CAC3475 [K] COG0789 Predicted transcriptional regulators Length = 243 Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/250 (31%), Positives = 149/250 (59%), Gaps = 15/250 (6%) Query: 5 VQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGLSLEG 64 + ++ L G++ RTL YYDEIG+L+P+ I +GYR+Y + + +LQQILF+REL L Sbjct: 3 INEVAKLTGITIRTLHYYDEIGLLKPSEITGAGYRLYDENSLSKLQQILFFRELEFPLNE 62 Query: 65 IKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKFAGFK 124 IKE++ + +D A AL+ E L++++++++ LI VE T+ + EG+++ F F Sbjct: 63 IKEIMRSSQYDTAEALKRQKELLIKKRERIDKLITLVENTI-KGEGKMS------FEEFD 115 Query: 125 QKLIDDNEQKYGQEIREKY-GEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQAMED 183 I+++++KY +E++E++ G A +S ++ N E+ Q++ E ++L+ ++ Sbjct: 116 MTEIEESKKKYAKEVKERFGGSDAYIESEKKTSNYGREEW---QKINDECKNILKAFADN 172 Query: 184 GDPASVLAQKAADLHRQWLTFHWDTY---SKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 D A +++ +L ++W F +++ + + G+ MYV+DERF D GTA+ Sbjct: 173 RDKAPE-SKEVQELVKEWQLFITESFYNCTNDILRGLGYMYVEDERFKKNIDSNGEGTAE 231 Query: 241 FLRDAVHVYA 250 F+ A+ +Y Sbjct: 232 FISKAIKIYC 241 >SP0739 [K] COG0789 Predicted transcriptional regulators Length = 246 Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 140/252 (55%), Gaps = 12/252 (4%) Query: 3 YTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGLSL 62 Y +++ L+GVS +TL +YD+IG+L P + + +GYR Y Q +++RLQ IL+Y+ LG SL Sbjct: 2 YHIKEAAQLSGVSVKTLHHYDKIGLLVPLK-SENGYRTYSQEDLERLQVILYYKYLGFSL 60 Query: 63 EGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKFAG 122 E I EL+ D L + L + +Q L+ LI ++KT+ + +G M+ EEKF G Sbjct: 61 EKIAELLKEERTDLLPHLTRQLDYLTRERQHLDTLISTLQKTIQEQKGERKMTIEEKFTG 120 Query: 123 FKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQAME 182 F + DN QKY QE EKYG++ + ++ R K +E AA QV F L Q ++ Sbjct: 121 FSYQ---DN-QKYHQEAVEKYGQEVMGQALERQKGHEDEATAAFNQV----FQTLAQNLQ 172 Query: 183 DGDPASVL--AQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 G PA+ ++AA L + T+ +D S E + + YV + F DK TA+ Sbjct: 173 VGLPATATENQEQAAKLLQAIRTYGFDC-SIEVFGHIGKGYVYNPEFKENIDKFGSETAQ 231 Query: 241 FLRDAVHVYAGT 252 + DA+ VY T Sbjct: 232 YTSDAIAVYVQT 243 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,500,263 Number of extensions: 680797 Number of successful extensions: 3242 Number of sequences better than 1.0e-05: 54 Number of HSP's gapped: 3257 Number of HSP's successfully gapped: 54 Length of query: 255 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 151 Effective length of database: 26,383,695 Effective search space: 3983937945 Effective search space used: 3983937945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)