BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0004.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 114 1e-25 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 112 7e-25 BMEII0752 [G] COG0395 ABC-type sugar transport system, permease ... 100 4e-21 Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 99 8e-21 all5282 [G] COG0395 ABC-type sugar transport system, permease co... 98 2e-20 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 3/235 (1%) Query: 45 SSSMALPKSFLNFDNFVAVFQRGGLLSGFGXXXXXXXXXXXXXXXFGTMVAYVLGRFSFK 104 SS P ++F NF ++R L + F FG++ AY L R K Sbjct: 42 SSKWIFPAD-ISFHNFSEAWERASLGNSFINTMIITGFSALLLIIFGSLAAYPLARRETK 100 Query: 105 MKPVVFGAYLVATIIPSITTQVATFGIIKNMGLYNTLGAPIVLYIGADV-IQIILYLQFI 163 + VF + IIP +T+ V + ++ + G+ NT I + A + + + LY FI Sbjct: 101 LNKAVFALLISIMIIPPLTSMVPLYRMVVDAGMVNTHAIAIFINTAAYMPLTVFLYSGFI 160 Query: 164 RN-IPVDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYNDMYIPYLYMPKQ 222 R+ IP +L E+A ++GA + KI+ +I+FPLL P TAT+ I+ + I+ND ++ Q Sbjct: 161 RSTIPKELVEAARIDGAGMLKIFFTIVFPLLKPITATICIISCVFIWNDYQFAIFFLQDQ 220 Query: 223 SLGVVTTVLMRFQGVNSGEWNXXXXXXXXXXXPTVVLYFFLQRYIFEGVTSGAVK 277 + +T + F G N+ + P VVL+ LQ+Y G++SGAVK Sbjct: 221 KVQTLTVAMAGFFGENANNLHLVAAAALMAMLPMVVLFLALQKYFIAGLSSGAVK 275 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 4/248 (1%) Query: 34 NAFKSTDEFNSSSSMALPKSFL--NFDNFVAVFQRGGLLSGFGXXXXXXXXXXXXXXXFG 91 ++ K E S +S +P F+ N+ + A F R G F Sbjct: 34 SSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIITTSVVIGAILSS 93 Query: 92 TMVAYVLGRFSFKMKPVVFGAYLVATIIPSITTQVATFGIIKNMGLYNTLGAPIV-LYIG 150 ++VAY R FK K V+F + ++P T + + + N+G NT IV ++G Sbjct: 94 SIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNTFYPLIVPAFLG 153 Query: 151 ADVIQIILYLQFIRNIPVDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYN 210 I L +QFIR IP +LDE+A+++G S F ++ +I PLL PA T+ I + ++ Sbjct: 154 GTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPALVTVAIFAFMWTWD 213 Query: 211 DMYIPYLYMPKQSLGVVTTVLMRFQGVNSG-EWNXXXXXXXXXXXPTVVLYFFLQRYIFE 269 D P +Y+ K + V L F SG W P +++ F QRY+ E Sbjct: 214 DFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVE 273 Query: 270 GVTSGAVK 277 G+++ +K Sbjct: 274 GISTTGLK 281 >BMEII0752 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 9/249 (3%) Query: 34 NAFKSTDE-FNSSSSMALPKSFLNFDNFVAVFQRGGLLSGFGXXXXXXXXXXXXXXXFGT 92 N+FKS + F P+SF + + V ++G L+ F FG Sbjct: 35 NSFKSRNAIFREPLRFPTPESF-SLIGYETVLKQGSFLTYFQNSAIVTVVSIFLVILFGA 93 Query: 93 MVAYVLGRFSFKMKPVVFGAYLVATIIPSITTQVATFGIIKNM---GLYNTLGAPIVLYI 149 M A+ L + F+ ++ G YL I+ I ++ T +++ M GL NTL A I++Y Sbjct: 94 MAAFALAEYRFRGN-MLTGLYLAIGIM--IPIRLGTVALLQGMVAAGLVNTLTALILVYT 150 Query: 150 GADV-IQIILYLQFIRNIPVDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISI 208 + + I + +F+R + DL + ++G S + I+ ++ PL+ PA AT+ + I I Sbjct: 151 AQGLPLAIFILSEFMRTVSDDLKNAGRIDGMSEYAIFFKLVLPLIRPAMATVAVFTMIPI 210 Query: 209 YNDMYIPYLYMPKQSLGVVTTVLMRFQGVNSGEWNXXXXXXXXXXXPTVVLYFFLQRYIF 268 +ND++ P + P ++ VT F G WN P ++LY R + Sbjct: 211 WNDLWFPLILAPSEATKTVTLGAQLFIGQFVTNWNAVLAALSLAMFPILILYVLFSRQLI 270 Query: 269 EGVTSGAVK 277 G+T+GAVK Sbjct: 271 RGITAGAVK 279 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 5/248 (2%) Query: 34 NAFKSTDEFNSSS-SMALPKSFLNFDNFVAVFQRGGLLSGFGXXXXXXXXXXXXXXXFGT 92 N+FKS +S S+ + ++++ F+NF+ + G L F Sbjct: 57 NSFKSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLEATLWSFIITILSVIVIVFFSA 116 Query: 93 MVAYVLGRFSFKMKPVVFGAYLVATIIPSITTQVATFGIIKNMGLYNTLGAPIVLYIG-A 151 M AY + R +++ ++V+ IIP T I + L N +G +VLY+G Sbjct: 117 MTAYYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVKIADMLHLNNPIGI-VVLYLGFG 175 Query: 152 DVIQIILYLQFIRNIPVDLDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYND 211 + + ++ F+++IP+D++E+AM++G + Y +++P+L P T+ IL + ++ND Sbjct: 176 SGLSVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVWPMLKPTAITVAILNAMWVWND 235 Query: 212 MYIPYLYMPKQS-LGVVTTVLMRFQGVNSG-EWNXXXXXXXXXXXPTVVLYFFLQRYIFE 269 +PYL + + + V+ F G N + P V+ YF QR+I E Sbjct: 236 YLLPYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAMLVLAIIPIVIFYFSTQRHIIE 295 Query: 270 GVTSGAVK 277 GV +GAVK Sbjct: 296 GVAAGAVK 303 >all5282 [G] COG0395 ABC-type sugar transport system, permease component Length = 275 Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 1/228 (0%) Query: 50 LPKSFLNFDNFVAVFQRGGLLSGFGXXXXXXXXXXXXXXXFGTMVAYVLGRFSFKMKPVV 109 LPK+ +F N+ +QRG L F + Y L R F+ + + Sbjct: 48 LPKNNWSFANYRDAWQRGKFLLAFANSTLVAIAVTAFQIVTSALAGYALARLKFRGRQTL 107 Query: 110 FGAYLVATIIPSITTQVATFGIIKNMGLYNTLGAPIVLYIGADVIQIILYLQFIRNIPVD 169 L IIP + F ++K L NT GA ++L + I L Q+ + IPV+ Sbjct: 108 LLIVLATLIIPFQLLVIPIFLVLKWGHLINTYGA-LILPTAVNGFGIFLLRQYFQTIPVE 166 Query: 170 LDESAMVEGASLFKIYRSIIFPLLTPATATLVILKTISIYNDMYIPYLYMPKQSLGVVTT 229 L+E+A ++GA+ +I ++ PL PA TL + I+ +ND++ P ++ K L V Sbjct: 167 LEEAATIDGANRLQILWQVMLPLARPALVTLFLFTFIAEWNDLFKPLVFTTKPELRTVQL 226 Query: 230 VLMRFQGVNSGEWNXXXXXXXXXXXPTVVLYFFLQRYIFEGVTSGAVK 277 L FQ + W P +VL+ QR G+ + +K Sbjct: 227 ALAEFQEQFTNNWPLMMAAVTIATVPVMVLFLIGQRQFIRGIATTGIK 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,804,804 Number of extensions: 563538 Number of successful extensions: 1753 Number of sequences better than 1.0e-05: 137 Number of HSP's gapped: 1611 Number of HSP's successfully gapped: 137 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)