BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0003.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 167 2e-41 BH1925 [G] COG1175 ABC-type sugar transport systems, permease co... 148 1e-35 ML1426 [G] COG1175 ABC-type sugar transport systems, permease co... 139 4e-33 slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 138 9e-33 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 137 2e-32 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 151/269 (56%), Gaps = 6/269 (2%) Query: 8 NKQKTIIIVSFLLIPLALLATFTYYPAIKLIYYSFTDWDGYSPEKPWVGLANYREVFSNP 67 N+ K II L+P + F Y P + ++ S W +SPEK ++GL NY E+F +P Sbjct: 3 NQNK--IIPYLFLVPALVFLLFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDP 60 Query: 68 DIFKVFTHNFAYFVMGLVQNIVA-IYFAVVLNSKLRGRNG--FRIMLFLPYIMNGVAVAF 124 ++ T+N Y V+ +V + + A VL KL + FR + FLP +++ +A Sbjct: 61 VFYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIAL 120 Query: 125 MFGYVFDTTNGSLNLFLNNIGLSSLAQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIAS 184 +F ++++ G LN L IGL L + +WLG + S+ W+ +GY ++YI S Sbjct: 121 LFDFIYNPETGLLNQLLQAIGLDQLTR-AWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVS 179 Query: 185 LQAIPRDIYEAAKIDGAGSFQTLWRVTLPNMKAVIQLNLFLTVTGALEVFDLPFVLTKGG 244 +Q IP ++YEAA++DGAG Q + +T+P K + + + +T+TGA VF+ P++LT GG Sbjct: 180 IQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILTGGG 239 Query: 245 PAGASQTYVQRVVDTAFAFNNYGLASAMS 273 P AS+ + +AF + G ASA++ Sbjct: 240 PGKASEVLSTFLYKSAFTKDMMGYASAIA 268 >BH1925 [G] COG1175 ABC-type sugar transport systems, permease components Length = 305 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 142/254 (55%), Gaps = 15/254 (5%) Query: 25 LLATFTYYPAIKLIYYSFTDWDGYSPEKPWVGLANYREVFSNPDIFKVFTHNFAYFVMG- 83 L A F +P I Y SF WDG +P +VGLAN++ +F++P F + F ++G Sbjct: 30 LFAVFGLFPMIFSFYLSFFRWDGLNPMS-YVGLANFQLIFNDPTFFSAIKNTFIIGILGT 88 Query: 84 LVQNIVAIYFAVVLNSKL-RGRNGFRIMLFLPYIMNGVAVAFMFGYVFDT-----TNGSL 137 L Q IV I A LNS L R ++ FR ++FLPYI + VAVA +FG VF+ N L Sbjct: 89 LPQIIVGILLAFALNSALIRFQHTFRTLVFLPYITSIVAVAIIFGLVFNNQPFGLANYVL 148 Query: 138 NLFLNNIGLSSLAQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIASLQAIPRDIYEAAK 197 +LF NI +Q W V ++A+ FWR++GYN +I++A +Q+IP+++YEAAK Sbjct: 149 SLF--NIDPVRWSQEYWP-----VKIAIATMVFWRWVGYNTIIFLAGMQSIPKELYEAAK 201 Query: 198 IDGAGSFQTLWRVTLPNMKAVIQLNLFLTVTGALEVFDLPFVLTKGGPAGASQTYVQRVV 257 IDGA Q + +T+P +K I +F G+L++F P + G T V + Sbjct: 202 IDGATIGQQIRLITVPMLKPFILFVVFTATIGSLQLFTEPLIFLGRGLREEGITMVAYLW 261 Query: 258 DTAFAFNNYGLASA 271 AF N +G ASA Sbjct: 262 RDAFVLNAFGTASA 275 >ML1426 [G] COG1175 ABC-type sugar transport systems, permease components Length = 319 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 141/255 (55%), Gaps = 8/255 (3%) Query: 23 LALLATFTYYPAIKLIYYSFTDWDGYSPEKPWVGLANYREVFSNPDIFKVFTHNFAYFVM 82 LA ++ F +P +Y SF WD ++P +VGLAN++ +F++ +F + N F + Sbjct: 39 LASVSVFMLFPLGFSLYMSFQKWDMFTPPV-FVGLANFQNLFTSDPLFLIALCNSVVFTV 97 Query: 83 GLVQNIVAIYFAV--VLNSKLRGRNGFRIMLFLPYIMNGVAVAFMFGYVFDTTNGSLNLF 140 G V V I V VLN K++G FR ++FLP ++ V +A ++ ++F+T NG LN+ Sbjct: 98 GTVIPTVLISLVVAGVLNQKVKGIGIFRTIVFLPLAISSVVMAVVWQFIFNTHNGLLNIM 157 Query: 141 LNNIGLSSLAQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIASLQAIPRDIYEAAKIDG 200 L IG+ + WL G SL WR + + V+ +A++Q +P+ +YEAAKIDG Sbjct: 158 LGWIGIGPI---PWLVNPGWAMASLCIVSVWRSVPFATVVLLAAMQEVPKTVYEAAKIDG 214 Query: 201 AGSFQTLWRVTLPNMKAVIQLNLFLTVTGALEVFDLPFVLT--KGGPAGASQTYVQRVVD 258 AG + +T+P ++ I + ++ A + FDL +VL GGP A+ + Sbjct: 215 AGEIRQFISITVPFIRGAISFVVVISFIHAFQTFDLVYVLNGPNGGPELATYVLGIMLFQ 274 Query: 259 TAFAFNNYGLASAMS 273 AF+F +G ASA++ Sbjct: 275 HAFSFLEFGYASALA 289 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 141/258 (54%), Gaps = 7/258 (2%) Query: 18 FLLIPLALLATFTYYPAIKLIYYSFTDWDGYSPEKP-WVGLANYREVFSNPDIFKVFTHN 76 FLL L +L +YPA++ SFT ++ + P WVGLAN+ ++ + + F H Sbjct: 19 FLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRDRVFWLTFRHT 78 Query: 77 FAYFVMGLVQNIVAIYF--AVVLNSKLRGRNGFRIMLFLPYIMNGVAVAFMFGYVFDTTN 134 Y V G+V ++ + A+++N KLRG FR+ + P ++ + VA + +N Sbjct: 79 LLYLV-GVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTP-VITSIVVAGIAWKALYASN 136 Query: 135 GSLNLFLNNIGLSSLAQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIASLQAIPRDIYE 194 G LN L +G S WL + L +S+ W+ +GY MVIY+A LQAIP+++YE Sbjct: 137 GILNQILALLGFSD--GIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQAIPQELYE 194 Query: 195 AAKIDGAGSFQTLWRVTLPNMKAVIQLNLFLTVTGALEVFDLPFVLTKGGPAGASQTYVQ 254 A IDGA ++ W +T+P M+ L L+ AL+VF+ +++T+GGP AS+T V Sbjct: 195 AGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQGGPLNASKTVVY 254 Query: 255 RVVDTAFAFNNYGLASAM 272 V + AF ASA+ Sbjct: 255 YVYERAFQDLEMNYASAI 272 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 151/269 (56%), Gaps = 8/269 (2%) Query: 8 NKQKTIIIVSFLLIPLAL-LATFTYYPAIKLIYYSFTDWDGYSPEKPWVGLANYREVFSN 66 ++KT+ + L+P L F P + + SFTDWD S + G NY+ +F++ Sbjct: 5 TRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIH-FTGFENYKRLFND 63 Query: 67 PDIFKVFTHNFAYFVMGLVQN--IVAIYFAVVLNSKLRGRNGFRIMLFLPYIMNGVAVAF 124 P+ +K F N F++G + + I+ + A++LN K++ R FR + FLP I + VAV+ Sbjct: 64 PEFWKSF-RNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSL 122 Query: 125 MFGYVFDTTNGSLNLFLNNIGLSSLAQTSWLGTEGLVNYSLASTGFWRFMGYNMVIYIAS 184 ++ ++F+ + G +N FL+ IG+ A +WL ++ T W+ +G+ MV+++ Sbjct: 123 VWKWLFNPSYGLINYFLSLIGI---AGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGG 179 Query: 185 LQAIPRDIYEAAKIDGAGSFQTLWRVTLPNMKAVIQLNLFLTVTGALEVFDLPFVLTKGG 244 LQ I YEAA +DGA + L+ +T+P + +++ + +VFD ++T+GG Sbjct: 180 LQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGG 239 Query: 245 PAGASQTYVQRVVDTAFAFNNYGLASAMS 273 P+GA+ T VQ + + AF + G ASAMS Sbjct: 240 PSGATMTLVQNIYNHAFRYFEMGYASAMS 268 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,328,202 Number of extensions: 836260 Number of successful extensions: 2621 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 2390 Number of HSP's successfully gapped: 167 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)