BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0002.p (448 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 83 8e-16 PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic... 77 4e-14 SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic... 74 5e-13 alr4277 [G] COG1653 ABC-type sugar transport system, periplasmic... 70 7e-12 APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic... 68 3e-11 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 128/292 (43%), Gaps = 28/292 (9%) Query: 83 YDEYVKRFNEKYPNIKVEFEASQTD-YNQQAKVRMASGELPDIMF----------IPTVP 131 ++E VK F + +P+I ++ EA D Y + KV + + PDI F I Sbjct: 49 FEEVVKEFEKDHPDIDIQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNK 108 Query: 132 NSDLTKYFAPLDDLGLNDQITFKDFK--SYDGKLYGITTGNSTSGIVYNKKAFADAGITE 189 DL+ Y+ +D + Q+ +Y+ K YG+ YNK F + + Sbjct: 109 ALDLSSYYK--NDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNL-D 165 Query: 190 VPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDM-PRVIEGKAEFPNEKLNQEA 248 PKTWDE + +KLK G P++ K W +++++ + R+++ K + N + Sbjct: 166 PPKTWDELIDVSKKLKEHGYTPISFGTKATWTISHYIGTLNQRMVDEKTR--EKDYNAKT 223 Query: 249 PFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNWVINQVIN 308 D GY KA L+EL Y K +NS + E ++ +GK M + I V Sbjct: 224 GEFTDEGYVKALEKLQELMP--YFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVEP 281 Query: 309 AGTTSDNVGFFPLP--YDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWM 358 N+G FP P G++ A + +S +K+ A F++++ Sbjct: 282 V-----NLGMFPFPEISGQKGSSEALTGAPEGFMISSRTKHPKEAMEFLQFL 328 >PAE1324 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 135/303 (44%), Gaps = 51/303 (16%) Query: 80 GKEYDEYVKRFNEKY----PNIKVEFEASQTD-YNQQAKVRMASGELPDIMFIPTV---- 130 G EY EY K+ ++Y PN++ E+ + + Q ++ + + P + I + Sbjct: 73 GAEY-EYFKQVLDEYQKINPNVEFEYVTRRAEEIAQILPTQLEAKQAPADVVITSFGWFV 131 Query: 131 -------PNSDLTKYFAPLDDL-GLNDQITFKDFKSYDGKLYGIT-TGNSTSGIVYNKKA 181 DLT P + + G+ D +T Y+GK++ T G Y K Sbjct: 132 VEMAKRGHVVDLTNVINPNEYVTGIFDPVT------YEGKIWATPFTIVLKPGFWYRKSF 185 Query: 182 FADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNN------WVYDMPRVIEG 235 F G++E P+TWDEFL ++LK G+ P+AS WPL++ Y P V G Sbjct: 186 FQQHGLSE-PQTWDEFLQLLKRLKEIGVTPIASGDGVGWPLSDVTEAFIIAYAGPDVFRG 244 Query: 236 KAEFPNEKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGM 295 E +K+ + P + LLRE GY + W Q+ + G +G+ Sbjct: 245 LTE---KKVKFDDPRINAVFRDRISLLLRE----GYFGE---PEEWTQAVEKWWNGTYGI 294 Query: 296 YFLGNWVINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFV 355 YF+G W++ V N D+VGFFP+P + G T D+ + V S + A FV Sbjct: 295 YFMGTWILGMVDN----PDDVGFFPMP-ETKGITGGT---DYIF-VPVYSPVRNEAVEFV 345 Query: 356 KWM 358 +W+ Sbjct: 346 QWL 348 >SMa2305 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 3/145 (2%) Query: 158 SYDGKLYGITTGNSTSGIVYNKKAFADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFK 217 + +GK YG+ TG + G+ Y K F + G+ +VP +WD+ LA EK K+ + P+A K Sbjct: 174 TVEGKQYGLPTGGTLWGMFYRKDVFDEHGL-KVPTSWDDLLAFGEKCKSASLTPVAMGTK 232 Query: 218 DKWPLNNWVYDMPRVIEGKAEFPNEKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDIN 277 D WP W M I G + +N E +T D F EL ++G+ D Sbjct: 233 DLWPAAGWFDQMNLRINGLDKH-FALMNGEMAYT-DETLKPVFEHWEELIKQGFFTPDHT 290 Query: 278 STNWEQSKKDIAAGKFGMYFLGNWV 302 S W+++ +A + GM LG +V Sbjct: 291 SFGWQEAGAFLAQKRAGMMNLGAFV 315 >alr4277 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 359 Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 0/332 (0%), Positives = 0/332 (0%), Gaps = 42/332 (12%) Query: 83 YDEYVKRFNEKYPNIKVE-FEASQTDYNQQAKVRMA--SGELPDIMFIPTVPNSDLTKY- 138 +D E ++A + D + + Sbjct: 82 FDARDLPTISAQHFHTAVHNEEQLAA-LEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAF 140 Query: 139 -FAPLDDLGLNDQI------TFKDFKSYDGKLYGITTGNSTSGIVYNKKAFADAGITEVP 191 + + D + N+ +++ A +G + Sbjct: 141 YHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLW 200 Query: 192 KTWDEFLAACEKL-----------KAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFP 240 + + R + Sbjct: 201 PQSHFDWVRPGIILYGVSPLEDRSTGADFGCQP---VMSLTSSLI---AVREHKAGEPVG 254 Query: 241 NEKLNQEAPFTMDNGYG--KAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFL 298 T R + + Sbjct: 255 YGGTWVSERDTRLGVVAMGYGDGYPRAAPSGTPVLVNGREVPIVGR--VAMDMICVDLGP 312 Query: 299 GNWVINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWM 358 + Sbjct: 313 QAQDKAGDPVILWGEG---LPVERIAEMTKVS-- 367 Query: 359 IEESGYEDFA---GFLSPLKGKESKLPQIQEF 387 Sbjct: 368 - 398 >APE0035 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 452 Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 142/295 (48%), Gaps = 28/295 (9%) Query: 80 GKEYDEY---VKRFNEKYPNIKVEFEASQTD-YNQQAKVRMASGELP-DIMFIPTVP-NS 133 GKE + + +++F E+ PN+ +++ + + + V+ +G P D++ P Sbjct: 84 GKEQEYFMTALEKFMEENPNVTIKYVPMRAEEVARTLSVQFEAGVTPADVVITPWAWWIV 143 Query: 134 DLTKYFAPLDDLGLNDQITFK----DFKSYDGKLYGIT-TGNSTSGIVYNKKAFADAGIT 188 ++ + ++ GL ++ + D ++ KL+G+ T G Y K FA G++ Sbjct: 144 EMAQKGHVIEVTGLINEDEYVGGILDNVKWNNKLWGVPFTMWLKPGFWYKKSFFAKHGLS 203 Query: 189 EVPKTWDEFLAACEKLKA-KGII-PLASNFKDKWPLNNWVYDMPRVIEGKAEFPNEKLNQ 246 E P +W+EFL +++K +GI P+ S WPL++ V + + G E + + Sbjct: 204 E-PNSWEEFLQLLDQIKGIEGIKNPIVSGDSVGWPLSD-VTEHFIIAFGGPELQYKLITG 261 Query: 247 EAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNWVINQV 306 E FT D + F L L E+GY + I W + + A ++ +YF+G W+ V Sbjct: 262 EVSFT-DPQVVEIFEKLAMLIEQGYFSEPIE---WTSAVEKWWAEEYALYFMGTWITGMV 317 Query: 307 INAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 + +++ FFPLP G D+ + + K ++N++AAK ++++ E Sbjct: 318 ED----PNDLAFFPLP----GARGVVGGTDYAF-IPKYTENLEAAKLLLQYLATE 363 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,042,748 Number of extensions: 1300025 Number of successful extensions: 1980 Number of sequences better than 1.0e-05: 37 Number of HSP's gapped: 1973 Number of HSP's successfully gapped: 37 Length of query: 448 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 338 Effective length of database: 25,691,691 Effective search space: 8683791558 Effective search space used: 8683791558 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 117 (49.7 bits)