BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0056.0003.p
         (167 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0292 [K] COG0640 Predicted transcriptional regulators               129   2e-30
PAB1227 [K] COG0640 Predicted transcriptional regulators               58   8e-09

>BH0292 [K] COG0640 Predicted transcriptional regulators
          Length = 177

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 6/153 (3%)

Query: 16  LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75
           L +S EQ KLL SALR+KI+H L   P T+KQVA++L +TPGN+HYHI +L+EG L++L+
Sbjct: 8   LSISIEQSKLLGSALRVKILHALEDVPKTAKQVADQLGQTPGNIHYHIQRLYEGQLIDLI 67

Query: 76  RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135
            T+  GGI++K+YR+K+TWF  ++ S      +      TTRL L+ E+LE F+ ++ D 
Sbjct: 68  ETKEIGGIVEKYYRAKSTWFNLKSDSK-SVSGDASATRITTRLLLTTEQLEQFQSDLRDV 126

Query: 136 ISSWESRVTLGT-----EYGVDIVIGHLRTPEP 163
           +  W  +          EY VDI +  +   EP
Sbjct: 127 LDQWGRKSPQDDWEGLLEYAVDISLREVNHEEP 159


>PAB1227 [K] COG0640 Predicted transcriptional regulators
          Length = 192

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 47/84 (55%)

Query: 19  SPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELVRTE 78
            PE  K++    R  I+ LL    +T  Q++E L KTP  +++HI KL E GL+E+ RTE
Sbjct: 10  DPEVIKVMLEDTRRAILKLLRNREMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTE 69

Query: 79  AAGGIIQKFYRSKATWFRAENFSG 102
             G +++K+Y   A  F    + G
Sbjct: 70  MKGNLVEKYYGRTADVFYINLYLG 93


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,105,175
Number of extensions: 442464
Number of successful extensions: 1976
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 68
Effective length of database: 26,960,365
Effective search space: 1833304820
Effective search space used: 1833304820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)