BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0055.0005.p (284 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1636 [K] COG1396 Predicted transcriptional regulators 149 6e-36 PA1263 [K] COG1396 Predicted transcriptional regulators 129 4e-30 Cgl1319 [K] COG1396 Predicted transcriptional regulators 122 6e-28 Cgl0484 [K] COG1396 Predicted transcriptional regulators 97 3e-20 >mll1636 [K] COG1396 Predicted transcriptional regulators Length = 290 Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 134/259 (51%), Gaps = 11/259 (4%) Query: 10 LGEFIKSRRYRLQPEEAGIKPFPGRRRTPGLRREEVAFLANVSVTYYTWLEQGRERNPSP 69 LG F++SRR RL P GI RRRTPGLRREEVA +A V T+YTWLEQGR+ PS Sbjct: 16 LGAFLRSRRERLTPSATGISTGL-RRRTPGLRREEVAMIAGVGTTWYTWLEQGRDVRPSV 74 Query: 70 EVLSHISQALQLDEDERKHLFNLAA---PEPANSYTAPKPEPHNTEFLQNLVNQLRYPSF 126 EVL+ +S AL+LD E++HLF LA PE A K E LQ+LV Q P++ Sbjct: 75 EVLTALSGALRLDAAEKRHLFTLAGRQLPE-RRRIAAGKVEGPLLHMLQSLVLQ---PAY 130 Query: 127 IANEVADVIVWNQGAKLVITDFGRLPEKERNMATLLFLDPEYPKRLINWEEFARYMTGLI 186 + DV+ WN A + D+G+L RN+ +F DP L +WE+ AR Sbjct: 131 VVGPRWDVLAWNDAAVAIFGDYGQLEGDARNIIHGVFTDPHRRHLLADWEQVARATLAAF 190 Query: 187 RASFDQNKENPMFMNRFD-RLKNSEEFLRLWEWHEIRHKTTAVPVQCRLADGPELAFTIH 245 RA + +P F +++S EF W ++ H+ + + R + F H Sbjct: 191 RAESARYVGDPDFERLIALMMRSSPEFREWWPQRDVVHRLSGMK-HLRHPTAGAMVFE-H 248 Query: 246 CAAAIDNDPGLHWCFFVPM 264 + +ID+ + + P+ Sbjct: 249 MSLSIDDGSDMKLIVYTPL 267 >PA1263 [K] COG1396 Predicted transcriptional regulators Length = 314 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 114/217 (52%), Gaps = 9/217 (4%) Query: 10 LGEFIKSRRYRLQPEEAGIKPFPGRRRTPGLRREEVAFLANVSVTYYTWLEQGRERNPSP 69 LG F++ RR ++P+ GI GRRRTPGLRREEVA LA V VT+YTWLEQGR S Sbjct: 50 LGAFLRRRRESIEPQRVGISRL-GRRRTPGLRREEVAQLAGVGVTWYTWLEQGRAVRASE 108 Query: 70 EVLSHISQALQLDEDERKHLFN---LAAPEPANSYTAPKPEPHNTEFLQNLVNQLRYPSF 126 +V+ I++AL +E E HLFN LAAP A KP L L P+ Sbjct: 109 QVIGAIARALLCNETETHHLFNLAGLAAPTSARRAVCEKPSAATQAILDALDP---LPAM 165 Query: 127 IANEVADVIVWNQG-AKLVITDFGRLPEKERNMATLLFLDPEYPKRLINWEEFARYMTGL 185 + N D+ +N+ +LV D +PE++RN L + + N EE M G Sbjct: 166 VQNARFDIRGYNRAYCRLVGIDLAEIPEEDRNCIYLALTHERWRYCMANREEALPRMVGF 225 Query: 186 IRASFDQNKENPMFMNRFDR-LKNSEEFLRLWEWHEI 221 RA+ + +P++ + R L+ S EF +W +E+ Sbjct: 226 FRAAMVERMGDPLWERQLQRCLEASAEFREIWRRNEV 262 >Cgl1319 [K] COG1396 Predicted transcriptional regulators Length = 325 Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 139/283 (49%), Gaps = 24/283 (8%) Query: 1 MDNHHTSSALGEFIKSRRYRLQPEEAGIKPFPGRRRTPGLRREEVAFLANVSVTYYTWLE 60 MD H + EF+ +RR RL P++AG+ + G+RR PGLRREEVA LA VSV YYT LE Sbjct: 23 MDVHADTR---EFLTARRNRLTPKDAGLPIYQGKRRVPGLRREEVAMLAGVSVDYYTRLE 79 Query: 61 QGRERNPSPEVLSHISQALQLDEDERKHLFNLA--APEPANSYTAPKPEPHNT---EFLQ 115 +G S +VLS ++ ALQLD+ E +HLF+LA + PA S P P + E L+ Sbjct: 80 RGNLSGVSEQVLSALATALQLDDAETQHLFDLAKLSNSPA-SRRKRTPAPKSVLRPEVLR 138 Query: 116 NLVNQLRYPSFIANEVADVIVWNQGAKLV--------ITDFGRLPEKERNMATLLFLDPE 167 L + P++I +E D++ N + + ++D N+A FLDP Sbjct: 139 ILNSMHDIPAYIRSESRDLLAANTFGRALYAPLYESTVSDGISGEPGSINVARFTFLDPA 198 Query: 168 YPKRLINWEEFARYMTGLIRASFDQNKENPMFMNRFDRL-KNSEEFLRLWEWHEIR-HKT 225 + WE + + +R Q + +F N L SE F ++W H +R H+T Sbjct: 199 AREFFPEWERTSADLVASLRTVAAQRPNDTLFSNLIGELVTKSEVFAQMWADHNVRMHRT 258 Query: 226 TAVPVQCRLADGPELAF-TIHCAAAIDNDPGLHWCFFVPMPGS 267 + + L EL F T+ A DP + + GS Sbjct: 259 GSKKIVHPLVGEMELDFETLDLPA----DPDIALVVYSAAEGS 297 >Cgl0484 [K] COG1396 Predicted transcriptional regulators Length = 260 Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 109/210 (51%), Gaps = 10/210 (4%) Query: 10 LGEFIKSRRYRLQPEEAGIKPFP-GRRRTPGLRREEVAFLANVSVTYYTWLEQGRERNPS 68 + +F+ +RR R+ P AG++ P RR PGLRREEVA LA +S+ YY E+G + S Sbjct: 9 VKDFLTTRRARITPAAAGLETQPWSDRRVPGLRREEVADLAGISLEYYIRFERGNLKGAS 68 Query: 69 PEVLSHISQALQLDEDERKHLFNLA--APEPANSYTAPKPEPHNTEFLQNLVNQLR-YPS 125 PE+L +++ALQL ER+HL NLA A P N +A P T LQ++V+ + P+ Sbjct: 69 PEILQSLAKALQLSPIEREHLHNLAYRADHPRNLPSAETP----TAPLQDIVDAVTDKPA 124 Query: 126 FIANEVADVIVWNQ-GAKLVITDFGRLPEKERNMATLLFLDPEYPKRLINWEEFARYMTG 184 +I NE D++ N+ A+L F LP++ N A F+ + ++ ++F+ Sbjct: 125 WIRNEQMDILATNRLCAELYAPIFKDLPDRP-NTARHCFIGATASEFWVDRDQFSAEFAA 183 Query: 185 LIRASFDQNKENPMFMNRFDRLKNSEEFLR 214 +R + + P D L R Sbjct: 184 KLRLEYARRPSVPGLKELIDELHQKSSVFR 213 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,489,331 Number of extensions: 889891 Number of successful extensions: 1562 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 1556 Number of HSP's successfully gapped: 4 Length of query: 284 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 179 Effective length of database: 26,268,361 Effective search space: 4702036619 Effective search space used: 4702036619 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)