BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0014.p (399 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ECs4272 [P] COG0226 ABC-type phosphate transport system, peripla... 240 3e-63 Z4789 [P] COG0226 ABC-type phosphate transport system, periplasm... 240 3e-63 Z4788 [P] COG0226 ABC-type phosphate transport system, periplasm... 220 3e-57 ECs4271 [P] COG0226 ABC-type phosphate transport system, peripla... 220 3e-57 STM3528 [P] COG0226 ABC-type phosphate transport system, peripla... 216 5e-56 >ECs4272 [P] COG0226 ABC-type phosphate transport system, periplasmic component Length = 505 Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 9/311 (2%) Query: 91 AGYELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASYHIHDQLPRLDGATALY 150 AGY+ + + V +D+ ++P ++ L PR+DGATA Y Sbjct: 196 AGYQAHLYKQQNPGVGVRENIDIRAWRPDKLNNRLTPLRGKPQIQFRQNWPRIDGATAAY 255 Query: 151 PLYSA--FVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIFAAAPSSAQQK 208 P+Y++ + +V PED + +E + S T AY R++ GD+DIIF A PS Q+K Sbjct: 256 PIYASAFYALSVIPED-FHVWEYLEN-----SRTPDAYNRIVKGDADIIFVAQPSGGQKK 309 Query: 209 EAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKEVGGKHQRIRA 268 A+++G L TP REAFVF VN NPV+SL+ QV+DI+SG + NW+ VGG Q I+ Sbjct: 310 RAEESGVTLLYTPFAREAFVFIVNADNPVNSLTEQQVRDIFSGAITNWRTVGGNDQEIQT 369 Query: 269 FQREEGSGSQTMLEKIMAGRTLMTPPQE-DVMDLMSGIISQTSDYRNFNNALGFSFLFYA 327 +QR E SGSQT+++ + + M PQE +V +M G+I ++YRN NNA+G++F +YA Sbjct: 370 WQRPEDSGSQTVMQSQVMKKVRMISPQETEVASVMEGMIKVVAEYRNTNNAIGYTFRYYA 429 Query: 328 SEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNVQPFLDWIQSAEGQ 387 ++MNA+ +I+LLAI+G+ P E IR+GKY + + VT + Q ++W + +GQ Sbjct: 430 TQMNADKNIRLLAINGITPTAENIRNGKYAYIVDAFMVTRENTTSETQKLVEWFLTPQGQ 489 Query: 388 ELVEKTGYTSL 398 LVE GY L Sbjct: 490 SLVEDVGYVPL 500 >Z4789 [P] COG0226 ABC-type phosphate transport system, periplasmic component Length = 502 Score = 240 bits (613), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 185/311 (59%), Gaps = 9/311 (2%) Query: 91 AGYELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASYHIHDQLPRLDGATALY 150 AGY+ + + V +D+ ++P ++ L PR+DGATA Y Sbjct: 193 AGYQAHLYKQQNPGVGVRENIDIRAWRPDKLNNRLTPLRGKPQIQFRQNWPRIDGATAAY 252 Query: 151 PLYSA--FVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIFAAAPSSAQQK 208 P+Y++ + +V PED + +E + S T AY R++ GD+DIIF A PS Q+K Sbjct: 253 PIYASAFYALSVIPED-FHVWEYLEN-----SRTPDAYNRIVKGDADIIFVAQPSGGQKK 306 Query: 209 EAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKEVGGKHQRIRA 268 A+++G L TP REAFVF VN NPV+SL+ QV+DI+SG + NW+ VGG Q I+ Sbjct: 307 RAEESGVTLLYTPFAREAFVFIVNADNPVNSLTEQQVRDIFSGAITNWRTVGGNDQEIQT 366 Query: 269 FQREEGSGSQTMLEKIMAGRTLMTPPQE-DVMDLMSGIISQTSDYRNFNNALGFSFLFYA 327 +QR E SGSQT+++ + + M PQE +V +M G+I ++YRN NNA+G++F +YA Sbjct: 367 WQRPEDSGSQTVMQSQVMKKVRMISPQETEVASVMEGMIKVVAEYRNTNNAIGYTFRYYA 426 Query: 328 SEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNVQPFLDWIQSAEGQ 387 ++MNA+ +I+LLAI+G+ P E IR+GKY + + VT + Q ++W + +GQ Sbjct: 427 TQMNADKNIRLLAINGITPTAENIRNGKYAYIVDAFMVTRENTTSETQKLVEWFLTPQGQ 486 Query: 388 ELVEKTGYTSL 398 LVE GY L Sbjct: 487 SLVEDVGYVPL 497 >Z4788 [P] COG0226 ABC-type phosphate transport system, periplasmic component Length = 330 Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 8/268 (2%) Query: 139 QLPRLDGATALYPLYSAFVQAVYPE-DNYDPYEINDQNIVICSS-TAFAYKRLIAGDSDI 196 + PR+ GATALYPLY++ + PE + D + Q + + TA AY LI G + + Sbjct: 53 RWPRVYGATALYPLYASAYYKLVPEPKDKDRTSLAWQAYGLQQTRTAEAYDSLIKGSATV 112 Query: 197 IFAAAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNW 256 IF A PS Q+K A++AG +LK T REAFVF V+ NPV+SLS QVKDI+SGK W Sbjct: 113 IFVAQPSEGQKKRAEEAGVKLKYTAFAREAFVFIVDINNPVNSLSEHQVKDIFSGKTSRW 172 Query: 257 KEVGGKHQRIRAFQREEGSGSQTMLEKIMAGRTLMTPPQED-VMDLMSGIISQTSDYRNF 315 +VGG + I+ +QR E SGSQT+++ ++ T M P ++ V+DLM G+I++ +DY+N Sbjct: 173 NKVGGSDEHIKVWQRPEDSGSQTIMKGLVMQDTPMLPAKKSTVIDLMGGLITEVADYQNT 232 Query: 316 NNALGFSFLFYASEMNAN-----HHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSV 370 +++G++F +Y + MN N IKLLAI+GV P +E IR+G YP + Y VT + Sbjct: 233 PSSIGYTFHYYVTRMNDNMLKMRKQIKLLAINGVAPTEENIRNGTYPYIVDAYMVTRENP 292 Query: 371 NPNVQPFLDWIQSAEGQELVEKTGYTSL 398 P Q F+DW S +GQ+LVE GY L Sbjct: 293 TPETQKFVDWFISQQGQQLVEDVGYVPL 320 >ECs4271 [P] COG0226 ABC-type phosphate transport system, periplasmic component Length = 330 Score = 220 bits (561), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 119/268 (44%), Positives = 169/268 (63%), Gaps = 8/268 (2%) Query: 139 QLPRLDGATALYPLYSAFVQAVYPE-DNYDPYEINDQNIVICSS-TAFAYKRLIAGDSDI 196 + PR+ GATALYPLY++ + PE + D + Q + + TA AY LI G + + Sbjct: 53 RWPRVYGATALYPLYASAYYKLVPEPKDKDRTSLAWQAYGLQQTRTAEAYDSLIKGSATV 112 Query: 197 IFAAAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNW 256 IF A PS Q+K A++AG +LK T REAFVF V+ NPV+SLS QVKDI+SGK W Sbjct: 113 IFVAQPSEGQKKRAEEAGVKLKYTAFAREAFVFIVDINNPVNSLSEHQVKDIFSGKTSRW 172 Query: 257 KEVGGKHQRIRAFQREEGSGSQTMLEKIMAGRTLMTPPQED-VMDLMSGIISQTSDYRNF 315 +VGG + I+ +QR E SGSQT+++ ++ T M P ++ V+DLM G+I++ +DY+N Sbjct: 173 NKVGGSDEHIKVWQRPEDSGSQTIMKGLVMQDTPMLPAKKSTVIDLMGGLITEVADYQNT 232 Query: 316 NNALGFSFLFYASEMNAN-----HHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSV 370 +++G++F +Y + MN N IKLLAI+GV P +E IR+G YP + Y VT + Sbjct: 233 PSSIGYTFHYYVTRMNDNMLKMRKQIKLLAINGVAPTEENIRNGTYPYIVDAYMVTRENP 292 Query: 371 NPNVQPFLDWIQSAEGQELVEKTGYTSL 398 P Q F+DW S +GQ+LVE GY L Sbjct: 293 TPETQKFVDWFISQQGQQLVEDVGYVPL 320 >STM3528 [P] COG0226 ABC-type phosphate transport system, periplasmic component Length = 519 Score = 216 bits (550), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 113/261 (43%), Positives = 164/261 (62%), Gaps = 9/261 (3%) Query: 141 PRLDGATALYPLYSAFVQAV--YPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIF 198 PRLDGATA PLY++ A+ +P+D I ++ + T AY+ ++ G++D+IF Sbjct: 260 PRLDGATAGLPLYASAFYALTRFPDD------ICPEDYLENQGTIEAYQNILNGNADLIF 313 Query: 199 AAAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKE 258 A PS+AQ++ A+ +G +L TP REAFVF VN+ NPVSSLS Q++ I+SG++ +W E Sbjct: 314 VAQPSTAQKQLAEASGVKLVYTPFAREAFVFIVNQNNPVSSLSDVQIRGIFSGRITHWNE 373 Query: 259 VGGKHQRIRAFQREEGSGSQT-MLEKIMAGRTLMTPPQEDVMDLMSGIISQTSDYRNFNN 317 VGG+ I+ +QR E SGSQT ML K+M LM V M ++ ++YRN +N Sbjct: 374 VGGEAIDIKPWQRPENSGSQTAMLAKVMKETKLMPAQTTSVATAMGDMVDIVAEYRNTHN 433 Query: 318 ALGFSFLFYASEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNVQPF 377 A+G++F +YA++M++N IKLLAI+ V P E IR+G YP T + Y VT Q Sbjct: 434 AIGYTFRYYATQMHSNKEIKLLAINDVAPTVENIRNGSYPYTVDVYMVTREHPTAETQKL 493 Query: 378 LDWIQSAEGQELVEKTGYTSL 398 +DW S +GQ+LV+ GY L Sbjct: 494 VDWFLSPQGQQLVQDVGYVPL 514 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 28,623,715 Number of extensions: 1092979 Number of successful extensions: 2577 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 2555 Number of HSP's successfully gapped: 18 Length of query: 399 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 290 Effective length of database: 25,807,025 Effective search space: 7484037250 Effective search space used: 7484037250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 117 (49.7 bits)