BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0003.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 202 6e-52 BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 184 1e-46 BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 166 3e-41 all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 157 2e-38 SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 154 2e-37 >lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 340 Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 159/308 (51%), Gaps = 47/308 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 VN GY + G +LI+ +FRLPRIVI++LVGAGLAVSG ++QG+ N Sbjct: 33 VNAGYSKLPFIEVIKSFFGMADAGTQLIVSEFRLPRIVIALLVGAGLAVSGTILQGISGN 92 Query: 77 DLADPGILGINAGAGLMVM----------------------------------------- 95 LADPGILGIN GAGL VM Sbjct: 93 GLADPGILGINNGAGLAVMLYISFFPSTMDVPVLFMPFIGFVGAILTAFVVYGLSYSRSE 152 Query: 96 ------LLLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 LLLT +LT+RLDP YQ A W+AG+IW +SW++V +LLPW+ Sbjct: 153 GLLPNRLLLTGIAVAAAIAALITLLTVRLDPQNYQRYAEWMAGNIWASSWQYVYALLPWL 212 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 ++ K + ++VL+ G+Q TGLG V +E+F L I F+G Sbjct: 213 IVLGAIAFMKVKTLDVLSFGNQVATGLGVRVEREKFVLLIVAVGLAAACVSVSGGIAFIG 272 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LIGPH+AR+LVG H+ ADT+GR I+QPSEI GIVVA+IGAPYF Sbjct: 273 LIGPHIARKLVGSAHRWVMVTAALSGGLLLLLADTIGRLIIQPSEIFAGIVVAIIGAPYF 332 Query: 270 LYLLARTK 277 L+LLA+ K Sbjct: 333 LFLLAKAK 340 >BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 336 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/310 (34%), Positives = 155/310 (50%), Gaps = 49/310 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGV--- 73 +N G I+ G+GT + EL+LF+FRLPRI++S+LVGAG++V+GA++Q V Sbjct: 27 LNLGVIKIAPLKTLQVFFGQGTARDELVLFEFRLPRIILSLLVGAGISVAGAILQSVSQN 86 Query: 74 ------------------------FRNDLADPGILG-----INAGAGLM----------- 93 F+ +D G +A AG + Sbjct: 87 ELAEPGILGINAGGSLAVVLFIYFFQGSASDLSFFGTFMLPFSALAGAILAAFLIYILAW 146 Query: 94 ------VMLLLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLP 147 + L+L ++ L++DP + A W++GSIWG +W + ++LP Sbjct: 147 KKGVTPIRLILVGIGVNAGFNALLLIFQLKMDPHDFMQAAVWISGSIWGANWNMIWAILP 206 Query: 148 WILIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGF 207 WI+I L + +YKAR +N++ LGDQ TGLG AV KE+ L I F Sbjct: 207 WIVILLLFTLYKARYLNIMQLGDQLATGLGTAVEKERRILLLAAVTLAASCVAAAGGIAF 266 Query: 208 VGLIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAP 267 +GLI PH+ARRL GP+HQ ADT+ R +L PSEIP G+V++V+GAP Sbjct: 267 LGLIAPHVARRLTGPRHQTLIPVSAFIGSFLFLLADTLARNVLAPSEIPVGLVISVLGAP 326 Query: 268 YFLYLLARTK 277 YF+YLL + Sbjct: 327 YFIYLLMKAN 336 >BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 145/310 (46%), Gaps = 50/310 (16%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILV----------------- 59 +NTG +R G G+++QEL+LF FRLPR+V+++L+ Sbjct: 24 LNTGAVRIPPSDVLKTLIGMGSERQELVLFSFRLPRMVLALLIGAGLAIAGTILQGITRN 83 Query: 60 ------------GAGLAV-------SGAVMQGVFRNDLADP--GILGINAGAGLMVM--- 95 GAGLAV G++ N P ++G A L+ + Sbjct: 84 ALADPGIIGINAGAGLAVVLFISFVQGSITGLSTFNIFLMPLFALMGAATAAVLIYLFAL 143 Query: 96 ---------LLLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLL 146 L+L ++ LR++P + WL G+IWG +W +VLSLL Sbjct: 144 KKGEVTPTRLILVGIGIAGLFSAAILIFQLRMEPRDFMSATIWLTGAIWGANWSYVLSLL 203 Query: 147 PWILIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIG 206 PWI++ LP V+YKAR +NVLNLGD GLG V E+ L I Sbjct: 204 PWIVLFLPLVLYKARYLNVLNLGDPVAVGLGTQVESERRWLLFAAVALAGSCVAVGGAIS 263 Query: 207 FVGLIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGA 266 F+GLI PHLARR+VGP H AD + R +L P+EIP GIVVA GA Sbjct: 264 FLGLIAPHLARRVVGPNHYVLLPAAALTGSLLLLFADFVARHLLAPNEIPVGIVVAFFGA 323 Query: 267 PYFLYLLART 276 PYF+YLL +T Sbjct: 324 PYFIYLLIKT 333 >all2585 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 346 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 132/284 (46%), Gaps = 42/284 (14%) Query: 37 GTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRNDLADPGILGINAGAG----- 91 G ++++ RLPR +++ +VG LAV+G + QG+ RN LADPGI+GINAGA Sbjct: 62 GNPDHAFVIYNLRLPRTLVACMVGVALAVAGTIFQGITRNPLADPGIIGINAGASLAAVT 121 Query: 92 ----------------------LMVMLLLTXXXXXXXXXXXXIVLTLRLDPDKYQFVA-- 127 LM L+ + I++ + L F + Sbjct: 122 VIVLFPSAPIYTLPLSAFAGALLMAGLIYSLAWNNGSSPVLFILMGVGLSAIAGAFTSLM 181 Query: 128 -------------TWLAGSIWGTSWKFVLSLLPWILIQLPYVIYKARVMNVLNLGDQTVT 174 WLAGS++G +W+ V S LPW+++ +P + AR +N LNLGD Sbjct: 182 ITFGDIYSVSDALVWLAGSVYGRTWEQVFSFLPWLIVFVPMALTLARHLNTLNLGDDVAK 241 Query: 175 GLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVGLIGPHLARRLVGPKHQXXXXXXXXX 234 GLG V ++ L IGFVGLI PHL R+LVG HQ Sbjct: 242 GLGTRVEWQRGLLVLVGVALAGAGVATAGMIGFVGLIAPHLGRQLVGTNHQGLLPTSALL 301 Query: 235 XXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYFLYLLARTKS 278 AD +GR + P EIP G+V A +GAPYFLYLL R + Sbjct: 302 GGMLVVVADFLGRTLFAPIEIPCGVVTAAVGAPYFLYLLIRNRK 345 >SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 338 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 102/167 (61%) Query: 112 IVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWILIQLPYVIYKARVMNVLNLGDQ 171 I + + D + F+A W AG+IWG W FV++ LPW+LI +PY+++K+ +N+++ GD Sbjct: 171 ITIMSKFDDKQSDFIAAWFAGNIWGDEWPFVIAFLPWVLIIIPYLLFKSNTLNIIHTGDN 230 Query: 172 TVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVGLIGPHLARRLVGPKHQXXXXXX 231 GLG +++E+ L I F+GL+GPH+A+R+VGP+HQ Sbjct: 231 IARGLGVRLSRERLILFFIAVMLSSAAVAVAGSISFIGLMGPHIAKRIVGPRHQLFLPIA 290 Query: 232 XXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYFLYLLARTKS 278 ADT+G+ +LQP +P GIVVA+IGAPYFLYL+ +TK+ Sbjct: 291 ILVGACLLVIADTIGKIVLQPGGVPAGIVVAIIGAPYFLYLMYKTKN 337 Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 49/65 (75%) Query: 35 GRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRNDLADPGILGINAGAGLMV 94 G+G ELIL DFRLPR++I+IL GA L++SGA++Q V +N +A+PGILGINAG G + Sbjct: 47 GQGDAIDELILLDFRLPRMMITILAGAALSISGAIVQSVTKNPIAEPGILGINAGGGFAI 106 Query: 95 MLLLT 99 L + Sbjct: 107 ALFIA 111 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.145 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,402,673 Number of extensions: 513687 Number of successful extensions: 1721 Number of sequences better than 1.0e-05: 139 Number of HSP's gapped: 1467 Number of HSP's successfully gapped: 265 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)