BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0008.p (316 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease c... 209 4e-54 MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease... 181 1e-45 SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 155 1e-37 BS_amyD [G] COG1175 ABC-type sugar transport systems, permease c... 153 4e-37 YPO3471 [G] COG1175 ABC-type sugar transport systems, permease c... 152 7e-37 >Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease components Length = 281 Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 116/281 (41%), Positives = 173/281 (61%), Gaps = 12/281 (4%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSE-FWSSFGL 96 +F PTL AF+ ++PF+ G +L+FT + I+ VG NY F+ E F S+FG Sbjct: 11 VFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTIT-NAKWVGIDNYVKAFSQREGFISAFGF 69 Query: 97 TLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVL 156 T+ V+ +V+ N+ AF+LA+ LT+++RG N FR FFMPNL+GGIVLG+ WQ + N VL Sbjct: 70 TVLVVIVSVITVNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVL 129 Query: 157 VYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASI 216 + SA W + L+++ WQ GYMM+IY+AGL VP ++ EAA + Sbjct: 130 SHYATT-----ISADW----KFGYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAEL 180 Query: 217 DGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQ 276 DG N W+ L +TIPM++PS +CLFL+L F ++D NL LT G P G T++V++++ Sbjct: 181 DGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIIN 240 Query: 277 KAFLSRDY-GVGQAEAFVLFLLVAVITLLQVYFSKKMEVEA 316 F + GVGQA+A + ++V VI Q+ ++ E+EA Sbjct: 241 TLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA 281 >MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease components Length = 283 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 155/268 (57%), Gaps = 16/268 (5%) Query: 54 PFVYGIYLTFTSW--DGISVGHTLVGFRNYGSVFADSEFWSSFGLTLKYVLFTVVLTNVL 111 P + G L+FT W + + +GF NY D F S T + L +++LTN Sbjct: 25 PIILGFLLSFTDWFKEQLIFEGKWIGFNNYKIAITDPRFIHSIWYTSVFTLLSLILTNSF 84 Query: 112 AFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLVYLGQKASIGIFSAS 171 F AYAL+K++ G N+FR FF+PN++GG++LG++WQ IF+N L IFS S Sbjct: 85 GFGFAYALSKKIAGTNIFRGVFFLPNMIGGLILGYLWQLIFDNALS--------SIFSHS 136 Query: 172 W-LAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASIDGANSWQKLTRMTI 230 +A + +V WQ AGY+MVIY+A L V + E+A I+G ++ + + Sbjct: 137 LRFGNKWEAMLAMSMVYTWQMAGYIMVIYIAALQNVNKSLSESAKIEGCGVFKHFFSVIL 196 Query: 231 PMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQKAFLS---RDYGVG 287 P ++P+ + LFL + R F ++D NL LTKG G T L++ ++Y AF+S +G+ Sbjct: 197 PSIMPAITIVLFLLVSRSFQMFDQNLALTKGD--GQTGLIAYNIYASAFVSAYQESFGIA 254 Query: 288 QAEAFVLFLLVAVITLLQVYFSKKMEVE 315 QA++F+ ++VA I++ QVY +KK EV+ Sbjct: 255 QAKSFIFVVIVAAISVTQVYITKKFEVQ 282 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/262 (32%), Positives = 140/262 (53%) Query: 53 IPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLTLKYVLFTVVLTNVLA 112 +P G + +FT+W G++ + VG N+ +F D +F ++ G T + VV L Sbjct: 35 VPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFMDPKFMNAIGFTAIIAIAMVVGEIALG 94 Query: 113 FMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLVYLGQKASIGIFSASW 172 +A L +++GQ FRA FF P ++ G+ + I++ +FN L +G I F S Sbjct: 95 IFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVALIFKQVFNYGLPAIGNALHIEFFQTSL 154 Query: 173 LAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASIDGANSWQKLTRMTIPM 232 L A + V V +WQ ++I++AGL +P +I EAA IDGA S Q + +P Sbjct: 155 LGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSIPTEITEAARIDGATSKQVFWNIELPY 214 Query: 233 MVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQKAFLSRDYGVGQAEAF 292 ++PS + L+L+ G +D +T GGP +T + + VY AF + +G A A Sbjct: 215 LLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNATTSLGLLVYNYAFKNNQFGYANAIAV 274 Query: 293 VLFLLVAVITLLQVYFSKKMEV 314 +LF L+ VI+++Q+ SKK E+ Sbjct: 275 ILFFLIVVISIIQLRVSKKFEI 296 >BS_amyD [G] COG1175 ABC-type sugar transport systems, permease components Length = 303 Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 148/275 (53%), Gaps = 1/275 (0%) Query: 42 PTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLTLKYV 101 P L + L MI PFV G +TFT+W+G S + VGF Y +F+D + W TL Y Sbjct: 27 PALLSVLVFMIYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLHYG 86 Query: 102 LFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLVYLGQ 161 L + NV+ + A L + ++ + V R ++P ++ +++G+IW F F+ L Sbjct: 87 LGSTFFQNVVGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALND 146 Query: 162 KASI-GIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASIDGAN 220 + GI + LA P W +V++ +QY G MV+Y+AGL +P D EAA +DGA Sbjct: 147 LLGVFGISPINALASPSLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAK 206 Query: 221 SWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQKAFL 280 Q+ +T+P+++PS + + +++ G ++D+ + LT GGP ++Q +S +Y F Sbjct: 207 QGQQFFTITLPLLMPSITINIVINIIGGLKLFDVIIALTAGGPGNASQSMSTFMYDLYFK 266 Query: 281 SRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 +D G + + ++ +I+ + + K+ E E Sbjct: 267 RQDAGYAATQGIFMAFVILIISFCALAYFKRKETE 301 >YPO3471 [G] COG1175 ABC-type sugar transport systems, permease components Length = 294 Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 18/292 (6%) Query: 32 RLRLRL---LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADS 88 RL+ L LF P L F IP + G+ ++F + + + VGF N+ F D Sbjct: 7 RLKRNLVPWLFLAPALVIFTWFKFIPMLQGLVMSFYKVN-FNQPNEWVGFANFSRAFGDE 65 Query: 89 EFWSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIW 148 S+ TL YVL T+V+ +AF LA L R R F+P + ++ +W Sbjct: 66 ALHSAVFNTLLYVLVTMVVAAFIAFFLAMLLEGPARHLRFIRTAIFLPAVTSAAIVAEMW 125 Query: 149 QFIFN--------NVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYV 200 + +FN +VL + +A +LA+ +A WT++++ +W+ Y MVI++ Sbjct: 126 RILFNPTSNGVVNHVLSWFSIEAQ------GFLADTDQALWTVMLLHIWKAVPYNMVIFI 179 Query: 201 AGLTGVPADIQEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTK 260 AGL G+ D+ +A+++DGAN W +L +T+P M+P+ V L LS RGF V+ T Sbjct: 180 AGLVGISRDLYDASNVDGANWWNRLRYVTLPGMIPALSVVLMLSFIRGFRVFAEVYATTG 239 Query: 261 GGPFGSTQLVSMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKM 312 GGP +T+++ H+Y+ F DYG A +F+LF V+T+ + K++ Sbjct: 240 GGPSNATEMIMTHIYKLGFEQFDYGYASAVSFLLFAFTVVLTIGHLTLKKRI 291 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,063,928 Number of extensions: 899106 Number of successful extensions: 3971 Number of sequences better than 1.0e-05: 173 Number of HSP's gapped: 3738 Number of HSP's successfully gapped: 173 Length of query: 316 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 210 Effective length of database: 26,153,027 Effective search space: 5492135670 Effective search space used: 5492135670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)