BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0007.p (275 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 196 3e-50 MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease ... 162 5e-40 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 157 2e-38 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 146 4e-35 CAC3670 [G] COG0395 ABC-type sugar transport system, permease co... 142 5e-34 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/245 (43%), Positives = 157/245 (64%), Gaps = 6/245 (2%) Query: 36 KENAMITSNPLALP---TSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTA 92 K I+S+P +LP T F N+ + +++A + IIT LSVI+I AMTA Sbjct: 60 KSKFAISSDPFSLPIGETWVGFENFMVGLTKQGFLEATLWSFIITILSVIVIVFFSAMTA 119 Query: 93 HYFVRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSL 152 +Y R + + V SMIIPFQ +M P VKI L LN+ ++ +YLGFGS L Sbjct: 120 YYITRVKTWWTNLLYYLFVVSMIIPFQMVMFPTVKIADMLH-LNNPIGIVVLYLGFGSGL 178 Query: 153 AVFIYHGFIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLL 212 +VF++ GF+KSIP ++EEAAMIDGC ++ +F++V+P+L PT +T+ ILN +W+WND+LL Sbjct: 179 SVFMFAGFVKSIPLDVEEAAMIDGCGPLQNYFRVVWPMLKPTAITVAILNAMWVWNDYLL 238 Query: 213 PSLVL-VEAGQRTLPLSTYSFYGTY-TVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVM 270 P LV+ + +T+P+ SF G+ D G +MA L+L I+P+VI Y Q++II+GV Sbjct: 239 PYLVIGLSTRYKTIPVVIQSFVGSNGNRDTGAMMAMLVLAIIPIVIFYFSTQRHIIEGVA 298 Query: 271 QGSVK 275 G+VK Sbjct: 299 AGAVK 303 >MYPU_1000 [G] COG0395 ABC-type sugar transport system, permease component Length = 288 Score = 162 bits (410), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 149/241 (61%), Gaps = 8/241 (3%) Query: 40 MITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYFVRNP 99 +IT N ALP+ ++ NY AF+ +N+ ++F+ ++++T +S I I ++TA R+ Sbjct: 51 LITKNIFALPSKYEGPNYQRAFQALNFAESFSVSLLVTIVSNISIIFFSSITAWQLARSK 110 Query: 100 SRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVFIYHG 159 +++ F + ++I+PFQAIM+PL+ + G + LN LIFMY GFG +++F+ HG Sbjct: 111 RLISKIIFYMFLITIIVPFQAIMLPLIYLMGKMKFLN-LFGLIFMYTGFGMPISIFMMHG 169 Query: 160 FIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSLVLVE 219 F+ +IP LEE + ++G IR++F+I+ P+L P T+ I+N +WIWNDFLLP LV + Sbjct: 170 FLSNIPLSLEEVSKVEGYRPIRVYFKIILPLLKPIIATVAIINTIWIWNDFLLPYLVYLS 229 Query: 220 AGQRTLPLST-----YSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSV 274 P +T GTY D+ +MA L + I+P+VI ++ QK II G+ G++ Sbjct: 230 NSHS--PTTTIIRLQEGLVGTYGTDFTAIMAGLTILIIPIVIFFIVMQKNIISGITNGAI 287 Query: 275 K 275 K Sbjct: 288 K 288 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/244 (38%), Positives = 143/244 (58%), Gaps = 6/244 (2%) Query: 36 KENAMITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYF 95 K I N PT+F + N+S + N+++IT LS++ + I M A+ Sbjct: 37 KPTKDIVDNFFGFPTNFTWDNFSRLLAD-GIGGYYWNSVVITVLSLLAVMIFIPMAAYSI 95 Query: 96 VRNPSRLNQNTFLF--MVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLA 153 RN S+ T ++ ++ + +PFQ IMIP+ + L + N+ LI +YL + Sbjct: 96 ARNMSKRKAFTIMYTLLILGIFVPFQVIMIPITVMMSKLGLANT-FGLILLYLTYAIPQT 154 Query: 154 VFIYHGFIK-SIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLL 212 +F+Y G+IK SIP+ L+EAA IDG ++ +F+I+FP++ P T I+N LW WNDF+L Sbjct: 155 LFLYVGYIKISIPESLDEAAEIDGANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFML 214 Query: 213 PSLVL-VEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQ 271 P LVL ++ TLPL Y++ G Y DYGP AS ++ I+ + IVYLF Q++II G+ Sbjct: 215 PLLVLNRDSKMWTLPLFQYNYAGQYFNDYGPSFASYVVGIISITIVYLFFQRHIISGMSN 274 Query: 272 GSVK 275 G+VK Sbjct: 275 GAVK 278 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 139/234 (59%), Gaps = 1/234 (0%) Query: 43 SNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYFVRNPSRL 102 S+ P F N+S A+++ + ++F NT+IIT S +L+ I G++ A+ R ++L Sbjct: 42 SSKWIFPADISFHNFSEAWERASLGNSFINTMIITGFSALLLIIFGSLAAYPLARRETKL 101 Query: 103 NQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVFIYHGFIK 162 N+ F +++ MIIP M+PL ++ M+N+ IF+ L VF+Y GFI+ Sbjct: 102 NKAVFALLISIMIIPPLTSMVPLYRMVVDAGMVNTHAIAIFINTAAYMPLTVFLYSGFIR 161 Query: 163 S-IPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSLVLVEAG 221 S IPKEL EAA IDG +++FF IVFP+L P T TI I++ ++IWND+ L + Sbjct: 162 STIPKELVEAARIDGAGMLKIFFTIVFPLLKPITATICIISCVFIWNDYQFAIFFLQDQK 221 Query: 222 QRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 +TL ++ F+G + + A+ ++ +LP+V+++L QKY I G+ G+VK Sbjct: 222 VQTLTVAMAGFFGENANNLHLVAAAALMAMLPMVVLFLALQKYFIAGLSSGAVK 275 >CAC3670 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 134/209 (64%), Gaps = 4/209 (1%) Query: 70 FTNTIIITALSVILIGICGAMTAHYFVRNP-SRLNQNTFLFMVASMIIPFQAIMIPLVKI 128 F NTI IT SVILI + + ++ VR+ S+L + ++F + + +PFQ M+PL + Sbjct: 74 FLNTIEITVFSVILILLIVPLGSYAIVRSKNSKLFKTIYMFCLLGLFVPFQVFMLPLTTV 133 Query: 129 YGSLDMLNSKTSLIFMYLGFGSSLAVFIYHGFIKS-IPKELEEAAMIDGCSRIRMFFQIV 187 L +N K L+F+Y +F+Y G++K+ +P ELEEAA IDGC R++ + +IV Sbjct: 134 AAHLHAMN-KIGLMFIYASLSIPQTMFLYIGYMKANLPLELEEAASIDGCGRLKTYLKIV 192 Query: 188 FPVLVPTTVTIGILNVLWIWNDFLLPSLVL-VEAGQRTLPLSTYSFYGTYTVDYGPLMAS 246 FP+L P TI ILN LWIWNDFLLP L+L + G TL L Y++ ++YGP+ A Sbjct: 193 FPLLKPINATIIILNALWIWNDFLLPFLILGGDNGNWTLTLFQYNYVAANQMNYGPMFAL 252 Query: 247 LMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 + +I+P++IVY+ Q+ II G+++GS+K Sbjct: 253 YISSIVPIIIVYIIFQRRIIGGMVEGSIK 281 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,447,943 Number of extensions: 640296 Number of successful extensions: 2320 Number of sequences better than 1.0e-05: 186 Number of HSP's gapped: 2198 Number of HSP's successfully gapped: 187 Length of query: 275 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 170 Effective length of database: 26,268,361 Effective search space: 4465621370 Effective search space used: 4465621370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)