BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0003.p (685 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2243 [C] COG1053 Succinate dehydrogenase/fumarate reductase, f... 77 1e-13 Cgl2581 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 66 2e-10 CAC2762_2 [S] COG3976 Uncharacterized protein conserved in bacteria 60 1e-08 Cgl2564 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ... 57 1e-07 >PA2243 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Length = 346 Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 0/375 (0%), Positives = 0/375 (0%), Gaps = 62/375 (16%) Query: 318 LRAMLAASVEKGGGQVITETTAKKLMTGANGEVTGVVAEKADGTTLEITGKSIIMATGGY 377 L + + NG Sbjct: 219 LAEVSQYEGVELLAYSCLGFGTLTGKY-LNGAKPAGARNTLFSR-FTRYSGEQTQKAVAA 276 Query: 378 AGNKEMVKE---AFGFEGVNGGLGQNIGEGLKMAWDAGAKVPDNFGGQMLHQTLARATEK 434 + A L A + + A + Sbjct: 277 YVDIARRHGLDPAQMALAFVRRQPFV-ASTLLGATTMDQLKTNIESLHLELSEDVLAEIE 335 Query: 435 LKAEYTPFEASYPLMLSY-LPTLMNVGPSGARFRDEAATLTSVAAA---NTSAFNGAYHL 490 Sbjct: 336 -AVH---- 390 Query: 491 VIISQAQIDALKAKGMNGVKAPSLPGMPPEFYATFADQFKLDTPWKDADKVFESMVANGD 550 Sbjct: 391 ----------------------------- 421 Query: 551 GYKGSTIAELAQNAGLDAEVFAHDFNQYQEATKTGVDTEFGK----------------AK 594 Sbjct: 422 481 Query: 595 EYLIPMGQSGPYYAIIAEVNNLGSVGGLLVNTQFQVLNDKRVPVKGLYAVGLESEGVLFN 654 Sbjct: 482 -- 539 Query: 655 DTYVGNGVGLGYSFT 669 Sbjct: 540 554 >Cgl2581 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Length = 346 Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 0/374 (0%), Positives = 0/374 (0%), Gaps = 65/374 (17%) Query: 318 LRAMLAASVEKGGGQVITETTAKKLMTGANGEVTGVVAEKADGTTLEITGKSIIMATGGY 377 + + V + A+ A + + Sbjct: 213 RSFEVGLAEVSQYEGVELLAYSCLGFG-TLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQ 271 Query: 378 AGNKEMVKEAF-----GFEGVNGGLGQNIGEGLKMAWDAGAKVPDNFGGQMLHQTLARAT 432 V A + + + + ++L Sbjct: 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKT-----NIESLHLEL 326 Query: 433 EKLKAEYTPFEASYP-LMLSYLPTLMNVGPSGARFRDEAATLTSVAAANTSAFNGAYHLV 491 + Sbjct: 327 SEDVLAEIEAVHQVYT-------------- 372 Query: 492 IISQAQIDA-LKAKGMNGVKAPSLPGMPPEFY----ATFADQFKLDTPWKDADKVFESMV 546 Sbjct: 373 ----------------- 415 Query: 547 ANGDGYKGSTIAELAQNAGLDAEVFAHDFNQYQEATKTGVDTEFGK-------------- 592 Sbjct: 416 475 Query: 593 -AKEYLIPMGQSGPYYAIIAEVNNLGSVGGLLVNTQFQVLNDKRVPVKGLYAVGLESEGV 651 Sbjct: 476 - 534 Query: 652 LFNDTYVGNGVGLG 665 Sbjct: 535 - 547 >CAC2762_2 [S] COG3976 Uncharacterized protein conserved in bacteria Length = 132 Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Query: 82 FKAGTYKAEADGKDGKIQVEVTLDAQSTITDIKVLNQKETAGIGVEAINKIKDEIISGQT 141 +K GTY A G +QV VT+ + I++I++L+ ET A + + DEII Q+ Sbjct: 46 YKDGTYTASGTGFSPNLQVSVTIK-DNKISNIELLSNNETPKFFERASSVVPDEIIKAQS 104 Query: 142 LAIDAVSGASESSAAILTAVEDALKQA 168 +DAVSGA+ SS I+ AV++AL++A Sbjct: 105 TNVDAVSGATRSSNGIIEAVQNALEKA 131 >Cgl2564 [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Length = 346 Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 14/330 (4%), Positives = 37/330 (11%), Gaps = 68/330 (20%) Query: 368 KSIIMATGGYAGNKEMVKEAFG-----FEGVNGGLGQNIGEGLKMAWDAGAKVPDNFGGQ 422 I + + FG + + + A++ Sbjct: 3 YHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQ---LDYAVAQGINLIDVAEMYPVPPRP 59 Query: 423 MLHQTLARATEKLKAEYTPFEASYPLMLSY-LPTLMNVGPSGARFRDEAAT----LTSVA 477 + L + R + A + Sbjct: 60 ETQGLTETYV---GNWLA--KHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL 114 Query: 478 AANTSAFNGAYHLVIISQAQIDALKAKGMNGVKAPSLPGMPPEFYATFADQFKLDTPWKD 537 + Y + + K Sbjct: 115 HDSLKRLQTDYLDLYQVHW----PQRPTNCFGKLGYSWTD-------------------- 150 Query: 538 ADKVFESMVANGDGYKGSTIAELAQNAGLDAEVFAHDFNQYQEATKTGVDTEFGKAKEYL 597 ++ + + + D Sbjct: 151 ---SAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTI--- 204 Query: 598 IPMGQS-----------------GPYYAIIAEVNNLGSVGGLLVNTQFQVLNDKRVPVKG 640 A + L N Sbjct: 205 QNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTR 264 Query: 641 LYAVGLESEGVLFNDTYVGNG--VGLGYSF 668 + + D + Sbjct: 265 YSGEQTQKAVAAYVD-IARRHGLDPAQMAL 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.130 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 46,486,058 Number of extensions: 1913935 Number of successful extensions: 4420 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 4424 Number of HSP's successfully gapped: 4 Length of query: 685 Length of database: 38,378,431 Length adjustment: 113 Effective length of query: 572 Effective length of database: 25,345,689 Effective search space: 14497734108 Effective search space used: 14497734108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 119 (50.4 bits)