BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0008.p
         (182 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1030 [K] COG1309 Transcriptional regulator                           61   1e-09
CAC0019 [K] COG1309 Transcriptional regulator                          54   1e-07
lin2076 [K] COG1309 Transcriptional regulator                          54   2e-07
ML0815 [K] COG1309 Transcriptional regulator                           53   3e-07
STM1122 [K] COG1309 Transcriptional regulator                          49   4e-06

>TM1030 [K] COG1309 Transcriptional regulator
          Length = 200

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 6/123 (4%)

Query: 17  VNRREQILEAAVVVFAEHGYFKATTAQVAEKVGISQPYIFKLFKNKEELFVAALDRAFER 76
           +++R+ IL+AAV VF + GY +ATT ++AEK G+++  IF  FKNKEEL+  A     E+
Sbjct: 2   LSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSVTEK 61

Query: 77  TIRTFS--AVEASGDTLLEESIRVYEQMME---THPSEIILQVQALGIRDEAIRRSMQTG 131
             + F    ++     + +   R  E+ +E   +HP E    +  + + DE +R+ +   
Sbjct: 62  LQKEFENFLMKNRNRDIFDFMERWIEKKLEYSASHPEEADFLITLVSV-DEGLRKRILLD 120

Query: 132 MNK 134
           + K
Sbjct: 121 LEK 123


>CAC0019 [K] COG1309 Transcriptional regulator
          Length = 201

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 73/124 (58%), Gaps = 6/124 (4%)

Query: 8   VRTKEEAASVNRREQILEAAVVVFAEHGYFKATTAQVAEKVGISQPYIFKLFKNKEELFV 67
           VR  ++  S+ ++++IL+AA  +  ++GY+  TTA +A+  G+S   ++  FK+K+++ +
Sbjct: 5   VRKPQQKRSIEKKKRILDAANTLLLKNGYYDITTADIAKAAGLSTGTVYAYFKDKKDILL 64

Query: 68  AAL---DRAF-ERTIRTFSAVEASGDTL--LEESIRVYEQMMETHPSEIILQVQALGIRD 121
           ++L    ++F E+T+     +  + + +  ++  ++++ +   ++P +   ++ +L   D
Sbjct: 65  SSLYESSKSFREQTLNELDKISQNDNPVNTIKNVLQIFIKFHTSYPKKYHDELMSLSYID 124

Query: 122 EAIR 125
           E +R
Sbjct: 125 EDVR 128


>lin2076 [K] COG1309 Transcriptional regulator
          Length = 206

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 19  RREQILEAAVVVFAEHGYFKATTAQVAEKVGISQPYIFKLFKNKEELFVAALDRAFERTI 78
           +R +ILEAA+  F E GY  A+T ++  K G+S+  IF  F +KE+L++AA+  A +   
Sbjct: 4   KRLKILEAAMEEFTEKGYQAASTNKICAKAGVSKGLIFHYFGSKEKLYIAAVSYAVDFAT 63

Query: 79  RTFSAVEASGDTLLEESIRVYEQMME---THPSEIILQVQAL------------GIRDEA 123
              S  E      +E +I   +  ++    +P+   L +QA             G  D+A
Sbjct: 64  NEVSLEEKRWSDFVEMAIWSTKMKLDFNRKYPAIFGLIMQAYGNPPPELKGKLDGFFDKA 123

Query: 124 IRRSMQTGMNKVTQLMENK 142
           I RS +  MN+V   M+ K
Sbjct: 124 IERS-EAQMNQVLNEMQLK 141


>ML0815 [K] COG1309 Transcriptional regulator
          Length = 228

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 37/54 (68%)

Query: 19 RREQILEAAVVVFAEHGYFKATTAQVAEKVGISQPYIFKLFKNKEELFVAALDR 72
          RR Q+L  A  VF +HGY  A   ++A++ G+S+P +++ F +K EL++A L+R
Sbjct: 40 RRGQLLIVASDVFVDHGYHAAGMDEIADRAGVSKPVLYQHFSSKLELYLAVLER 93


>STM1122 [K] COG1309 Transcriptional regulator
          Length = 212

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 2/109 (1%)

Query: 1   MTKRSGDVRTKEEAASVNRREQILEAAVVVFAEHGYFKATTAQVAEKVGISQPYIFKLFK 60
           M++R+     K   A+  +R+ IL AA+ VF+++G   A   QVAE+ G+S+  +   + 
Sbjct: 1   MSQRTEKKIGKRSQATGAKRQLILTAALAVFSQYGIHGARLEQVAERAGVSKTNLLYYYP 60

Query: 61  NKEELFVAALDRAFERTIRTFSAVEASGDTL--LEESIRVYEQMMETHP 107
           +KE L+VA + +  +  +    A  A    L  ++E IR+  ++   +P
Sbjct: 61  SKEALYVAVMRQILDVWLAPLKAFRAEFSPLEAIKEYIRLKLEVSRDYP 109


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,399,807
Number of extensions: 360719
Number of successful extensions: 1093
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 9
Length of query: 182
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 82
Effective length of database: 26,845,031
Effective search space: 2201292542
Effective search space used: 2201292542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)