BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0006.p
         (340 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0181 [G] COG2971 Predicted N-acetylglucosamine kinase             60   5e-09
mll4769 [G] COG2971 Predicted N-acetylglucosamine kinase               57   3e-08
BMEII0756 [G] COG2971 Predicted N-acetylglucosamine kinase             55   2e-07

>BMEII0181 [G] COG2971 Predicted N-acetylglucosamine kinase
          Length = 293

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 110/255 (43%), Gaps = 37/255 (14%)

Query: 8   VIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDL-QATHNVKQAIQEALQVAGRTLG 66
           +I VDGGGT  R +++  DG V+S    G A +  D   A  NV + +  A+  AG  + 
Sbjct: 9   LIAVDGGGTGCRALLAKADGNVISKAVGGPANIGADTAMAIANVMETVTRAVHDAGLHIS 68

Query: 67  --DVRGLAAGIAGYDSQED-LEWVQALTAVEGLDCPKW--HYNDAVAAHYGALLTKPGIV 121
             D  G   G+AG +S  D LE V  L          W    +D V A  GAL    G +
Sbjct: 69  RLDETGAVLGLAGANSIPDRLELVAGLPF-------AWVRIVSDTVTALQGALGDNDGAI 121

Query: 122 ALSGTGSIIMAMKEDGQYLRNYDFHHYTGSGARFLAYDAAYEMLAGHTDETDREMIKDML 181
            + GTGS          ++R       +  G  F+  D A     G      RE++++ L
Sbjct: 122 VILGTGS---------AFVRQVQGTAESIGGRGFMLSDHAGGARLG------RELLEETL 166

Query: 182 CHW-GAGTIQELWQLARTGFIEDRR---NRDRK-----FEQFAPFITEAASKGSSLAGRV 232
             + G  +  EL +     F +D R   +  RK     +  FAP + E  +KG  L   +
Sbjct: 167 LAFDGMASRTELTEAVMVRFNDDLRQIISFSRKATAADYAIFAPLVFEYVAKGDPLGLSI 226

Query: 233 SDRAIYQLKVGIELL 247
           ++RA   +K G++ L
Sbjct: 227 AERACAYIKKGLDRL 241


>mll4769 [G] COG2971 Predicted N-acetylglucosamine kinase
          Length = 293

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 27/252 (10%)

Query: 6   EVVIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDLQ-ATHNVKQAIQEALQVAGRT 64
           + V+G+DGGGT  R  +++++G V+   +SGAA ++ DL  A  N+  A ++A   AG+ 
Sbjct: 2   KFVLGIDGGGTSCRAALATVEGSVIGRAKSGAANIRTDLTGARSNIVDAARQAFIAAGQD 61

Query: 65  ------LGDVRGLA-AGIAGYDSQEDLEWVQALTAVEGLDCPKWHYNDAVAAHYGALLTK 117
                    + GLA A +  Y  Q +     +++ VE          DA  A  GA+ + 
Sbjct: 62  PELIPQTPAILGLAGANVGTYRQQLEAILPFSISRVE---------TDAEIALEGAVGSG 112

Query: 118 PGIVALSGTGSIIMAMKE-DGQYLRNYDFH-HYTGSGARFLAYDAAYEMLAGHTDETDRE 175
            G +A+ GTG+  MA K+   + +  + F     GSGAR +  D   + L  H       
Sbjct: 113 DGAMAILGTGTAYMARKDGTSRAIGGWGFQVGDQGSGAR-IGRDLLEQTLLAHDGVRAAS 171

Query: 176 MIKDMLCHWGAGTIQELWQLARTGFIEDRRNRDRKFEQFAPFITEAASKGSSLAGRVSDR 235
            + D +        +++ +     F  + +  D  F  FAP + E A KG ++A  + D+
Sbjct: 172 PLTDAMMAIFRNNPEDVVE-----FTTNAKPGD--FGGFAPKVFEHAQKGDAVANWIVDK 224

Query: 236 AIYQLKVGIELL 247
           A+  ++  +  L
Sbjct: 225 AVGDVEASLGAL 236


>BMEII0756 [G] COG2971 Predicted N-acetylglucosamine kinase
          Length = 308

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 65/139 (46%), Gaps = 21/139 (15%)

Query: 6   EVVIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDLQATH-NVKQAIQEALQVAG-- 62
           E  IGVDGGGT  R +V+  DG +L +  SG+A +  D Q +  NVK AI  A   AG  
Sbjct: 16  EFFIGVDGGGTGCRAVVAGRDGTILGFGHSGSANIVTDPQTSLVNVKAAIDNAFDEAGLD 75

Query: 63  ----RTLGDVRGLAAGI---AGYDSQEDLEWVQALTAVEGLDCPKWHYNDAVAAHYGALL 115
                T   V GLA G    AG   +  L +  A    +GL            A  GAL 
Sbjct: 76  KAHYATSHAVLGLAGGNVEGAGLPIERGLPFAHANVEFDGL-----------IALQGALG 124

Query: 116 TKPGIVALSGTGSIIMAMK 134
            K G+VA+ GTG+  +  K
Sbjct: 125 DKDGVVAILGTGTAYIIRK 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 25,379,349
Number of extensions: 1046349
Number of successful extensions: 13169
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13167
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 38,378,431
Length adjustment: 107
Effective length of query: 233
Effective length of database: 26,037,693
Effective search space: 6066782469
Effective search space used: 6066782469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)