BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0001.p (449 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L81453_2 [G] COG0726 Predicted xylanase/chitin deacetylase 106 8e-23 SPy1370_2 [G] COG0726 Predicted xylanase/chitin deacetylase 105 1e-22 BS_yjeA_2 [G] COG0726 Predicted xylanase/chitin deacetylase 98 2e-20 all4345 [G] COG0726 Predicted xylanase/chitin deacetylase 97 7e-20 alr1793 [G] COG0726 Predicted xylanase/chitin deacetylase 89 1e-17 >L81453_2 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 222 Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 5/178 (2%) Query: 270 KGYVALSFDDGPS-KYTQEIVDILLAHGVAANFLFIGQNAQHYPQAVRYADEHGMPVGSH 328 K +AL+FDDGP+ T +++ I V A F +G+ AQ PQ ++ + G V SH Sbjct: 25 KKLIALTFDDGPNPNTTPQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASH 84 Query: 329 SWDHSDLTKNSSGENHNNLLRSVQVLEQNTGKPVTVFRPPYGAINGSLAAEAGKQKLKVL 388 +WDH DL S + + + Q++ + TGK VT+FRPPYG+ N S+ ++ L + Sbjct: 85 TWDHKDLVTLSPDQQKQEIESANQLINKITGKNVTLFRPPYGSYNKSVLSQTN---LSAV 141 Query: 389 LWNRDPEDWKADTAEQITRYFHNTDPSGGIYLLHE-KAVTVKALPAIIEYLKSKQLKF 445 W D DW+ T+ + + G I L+H+ +V A+P II+ LK++ F Sbjct: 142 NWTVDTNDWRYRTSAPVVQNVSTYAHDGAIILMHDIHQWSVDAVPQIIKNLKAQGYTF 199 >SPy1370_2 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 223 Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 5/180 (2%) Query: 264 YEYSLAKGYVALSFDDGPSKYTQ-EIVDILLAHGVAANFLFIGQNAQHYPQAVRYADEHG 322 Y+ K VAL+FDDGP T +++DIL + F IG + + + G Sbjct: 33 YKEQHPKKLVALTFDDGPDPTTTPQVLDILAKYQAKGTFFMIGSKVVNNENLTKRVSDAG 92 Query: 323 MPVGSHSWDHSDLTKNSSGENHNNLLRSVQVLEQNTGKPVTVFRPPYGAINGSLAAEAGK 382 + +H+WDH +LT S E + + + Q +E+ GK RPPYGA N ++ +G Sbjct: 93 HEIANHTWDHPNLTNLSVSEIQHQVNMTNQAIEKACGKKPRYLRPPYGATNATVQQSSG- 151 Query: 383 QKLKVLLWNRDPEDWKADTAEQITRYFHNTDPSGGIYLLHE-KAVTVKALPAIIEYLKSK 441 L +LW D DW+ + + I N GG+ L+H+ T+ ALP ++EYLK++ Sbjct: 152 --LTQMLWTVDTRDWENHSTDGIMTNVKNQLQPGGVVLMHDIHQTTINALPTVMEYLKAE 209 >BS_yjeA_2 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 335 Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 9/152 (5%), Positives = 30/152 (19%), Gaps = 4/152 (2%) Query: 273 VALSFDDGPS-KYTQEIVDILLAHGVAANFLFIGQNAQHYPQAVRYADEHGMPVGSHSWD 331 A+ + + A + ++ + + + Sbjct: 30 AAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEY 89 Query: 332 HSDLTKNSSGENHNNLLRSVQVLEQNTGKPVTVFRPPYGAINGSLAAEAGKQKLKVLLWN 391 H + L RS + E + + + L Sbjct: 90 HMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLM---NEVDDLLQ 146 Query: 392 RDPEDWKADTAEQITRYFHNTDPSGGIYLLHE 423 + + A++ + + + Sbjct: 147 QVLDCPAAESLSYQQAFLRYLEIDPLSADKTQ 178 >all4345 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 305 Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 10/181 (5%) Query: 273 VALSFDDGP-SKYTQEIVDILLAHGVAANFLFIGQNAQHYPQAVRYADEHGMPVGSHSWD 331 +AL+FDDGP + T +++DIL + + A F +GQN ++YP +R G +G+H+W Sbjct: 108 IALTFDDGPWPESTTQVLDILKQNNIKATFFVVGQNVKNYPDLLRRVAAEGHAIGNHTWH 167 Query: 332 H--SDLTKNSSGENHNNLLRSVQVLEQNTGKPVTVFRPPYGAINGSLAAEAGKQKLKVLL 389 H + + NN + ++ Q TG +FRPP G +N L + A K V++ Sbjct: 168 HWYHFMNPQVAAYEVNN---TTNLIYQITGVKTDLFRPPGGMMNNGLVSYARNNKYAVIM 224 Query: 390 WNRDPEDWKADTAEQITRYFHNTDPSGGIYLLHE----KAVTVKALPAIIEYLKSKQLKF 445 W+ D D+ + ++ GGI L+H+ + TV+ALP II + + F Sbjct: 225 WSSDSIDYSRPSVPRLINNVFRLAKPGGIVLMHDGGGNRTQTVQALPEIIARFRKQGYSF 284 Query: 446 A 446 Sbjct: 285 V 285 >alr1793 [G] COG0726 Predicted xylanase/chitin deacetylase Length = 359 Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 12/181 (6%), Positives = 31/181 (17%), Gaps = 9/181 (4%) Query: 273 VALSFDDGP-SKYTQEIVDILLAHGVAANFLFIGQNAQHYPQAVRYADEHGMPVGSHSWD 331 S V + L G+ + Q Y + + + + Sbjct: 102 EEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFA 161 Query: 332 HSDLTKNSSGENHNNLLRSVQVLEQNTGKPVTVFRPPYGAINGSLAAEAGKQKLKVLLWN 391 +D K + E + + + + + L + Sbjct: 162 RADEPKCGATEK-QLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPL 220 Query: 392 RDPEDW--KADTAEQITRYFHNTDPSGGIYLLH----EKAVTVKALPAIIEYLKSKQLKF 445 D V+ + + + Sbjct: 221 EDRSTGADFGCQPVMSLTSSLIAVR-EHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYP 279 Query: 446 A 446 Sbjct: 280 R 280 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,389,752 Number of extensions: 1151603 Number of successful extensions: 2353 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 2325 Number of HSP's successfully gapped: 32 Length of query: 449 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 339 Effective length of database: 25,691,691 Effective search space: 8709483249 Effective search space used: 8709483249 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)