BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0032.p
         (90 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ytiA [J] COG0254 Ribosomal protein L31                             117   6e-27
VC0878 [J] COG0254 Ribosomal protein L31                               85   3e-17
PA3601 [J] COG0254 Ribosomal protein L31                               82   2e-16
PM0220 [J] COG0254 Ribosomal protein L31                               79   2e-15
NMB0942 [J] COG0254 Ribosomal protein L31                              76   9e-15

>BS_ytiA [J] COG0254 Ribosomal protein L31
          Length = 82

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 67/77 (87%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MKEGIHPK ++VIF D + G++FLS+STK+SNET EWEDGNTYPVI+V+ SS +HPFYTG
Sbjct: 1  MKEGIHPKNHKVIFQDVNSGYRFLSTSTKTSNETAEWEDGNTYPVIKVEVSSDTHPFYTG 60

Query: 69 KQRDTETGGRVDKFKQR 85
          +Q+  E GGRV++FK+R
Sbjct: 61 RQKFNEKGGRVEQFKKR 77


>VC0878 [J] COG0254 Ribosomal protein L31
          Length = 85

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MK GIHP + +V+F D +V   F+  ST  ++ T+EWE G TYP I ++ SS SHPFYTG
Sbjct: 1  MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWE-GKTYPYITIEVSSESHPFYTG 59

Query: 69 KQRDTETGGRVDKFKQRLAQ 88
          KQR  +  GRV  F +R  Q
Sbjct: 60 KQRVVQKEGRVANFTRRFGQ 79


>PA3601 [J] COG0254 Ribosomal protein L31
          Length = 87

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 51/79 (64%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MK GIHP++  V+F D S    FL  ST  +++T    DG TYP + +D SSASHP YTG
Sbjct: 1  MKPGIHPEYRPVLFHDTSADVYFLIGSTAETDKTHTHTDGKTYPYVTLDVSSASHPVYTG 60

Query: 69 KQRDTETGGRVDKFKQRLA 87
          +QR T++ GRV  F +R A
Sbjct: 61 EQRKTKSEGRVAGFNKRFA 79


>PM0220 [J] COG0254 Ribosomal protein L31
          Length = 88

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 9  MKEGIHPK-FNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYT 67
          MK+GIHP+ +  V+F D++    FL  S   +  TM+WEDG+ YPV   D+SSASHP+YT
Sbjct: 1  MKKGIHPENYRTVLFYDSNAKQGFLIRSCARTTTTMKWEDGHEYPVFMCDTSSASHPYYT 60

Query: 68 GKQRDTETGGRVDKFKQRLAQ 88
          GK R     GR   F  R  +
Sbjct: 61 GKTRQIANEGRASDFVNRYGK 81


>NMB0942 [J] COG0254 Ribosomal protein L31
          Length = 91

 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 9  MKEGIHP-KFNQVIFLDASVGFKFL-SSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFY 66
          MK  IHP  +  V+F D+S    +L  S  ++  +TM W DG  YP+  +D+SSASHP Y
Sbjct: 1  MKPNIHPDNYRTVLFFDSSANEGWLIRSCAETHGKTMVWTDGKEYPLFSLDTSSASHPVY 60

Query: 67 TGKQRDTETGGRVDKFKQRL 86
          TGKQR+  T GR  KF QR 
Sbjct: 61 TGKQRNVNTEGRASKFNQRF 80


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,291,856
Number of extensions: 220975
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 27
Length of query: 90
Length of database: 38,378,431
Length adjustment: 60
Effective length of query: 30
Effective length of database: 31,458,391
Effective search space: 943751730
Effective search space used: 943751730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)