BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0018.p (210 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM2755 [G] COG0269 3-hexulose-6-phosphate synthase and related ... 166 3e-41 MA4504_1 [G] COG0269 3-hexulose-6-phosphate synthase and related... 145 5e-35 AF0861_1 [G] COG0269 3-hexulose-6-phosphate synthase and related... 139 3e-33 STM4386 [G] COG0269 3-hexulose-6-phosphate synthase and related ... 94 1e-19 sgaH [G] COG0269 3-hexulose-6-phosphate synthase and related pro... 92 5e-19 >STM2755 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 134/209 (64%) Query: 1 MKLQLALDLVNIDGAKEIVSEVAGFIDIVEIGTPIVINEGLHAVKAIKEAFPALTVLADL 60 MKLQLALD + + A + +V +DI+E+GTP +I EG++A+KAIKE +P VLAD Sbjct: 1 MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADA 60 Query: 61 KIMDAGGYEVMKAAEAGADIVTVLGVSDDSTIKGAVEEAKKSGREILVDLINVKDIAARA 120 KIMD G +E +AGAD VTVLGV+D TI+ + AK++G++++VD+I V D+ AR Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARV 120 Query: 121 AEVDALGVDYVCVHSGYDHQAEGKNSFADLQAIKSVVKQAKTAIAGGIKLNTLPEVIAAG 180 ++ G D + VH+G D QA G+ DL + V ++A+ A+AGGI T+ + G Sbjct: 121 RLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLG 180 Query: 181 PDLVIVGGGITGESDQKAAAAEMKRLVSQ 209 PD+VIVG IT +D A ++ +++ Q Sbjct: 181 PDVVIVGSAITHAADPAGEARKISQVLLQ 209 >MA4504_1 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 241 Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 131/206 (63%), Gaps = 2/206 (0%) Query: 3 LQLALDLVNIDGAKEIVSE-VAGFIDIVEIGTPIVINEGLHAVKAIKEAFPALTVLADLK 61 +Q+ALDL+ +D A EI E VAG D +EIGTP++ +EG+ +++ +++AFP T+LAD+K Sbjct: 32 IQVALDLLELDRAVEIAKEAVAGGADWIEIGTPLIKSEGMDSIRTMRKAFPDRTILADMK 91 Query: 62 IMDAGGYEVMKAAEAGADIVTVLGVSDDSTIKGAVEEAKKSGREILVDLINVKDIAARAA 121 +D G EV AA+AGAD+ +LG +DDSTI A+ A K G ++ DLI+ + RA Sbjct: 92 TVDTGAMEVEMAAKAGADVAIILGSADDSTILDALRSAHKYGVRVMADLISAPEPIKRAV 151 Query: 122 EVDALGVDYVCVHSGYDHQAEGKNSFADLQAIKSVVKQAKTAIAGGIKLNTLPEVIAAGP 181 +++ALGVDY+ VH G D Q GK+ + L I V + A+AGG+ + + AG Sbjct: 152 DLEALGVDYINVHVGIDQQMVGKDPISILMEISEKV-SVQLAVAGGLDAEGAAKAVKAGA 210 Query: 182 DLVIVGGGITGESDQKAAAAEMKRLV 207 +VIVGG IT + AA ++++ V Sbjct: 211 RIVIVGGNITRSDNVTEAAKKIRQSV 236 >AF0861_1 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 0/211 (0%), Positives = 0/211 (0%), Gaps = 6/211 (2%) Query: 3 LQLALDLVNIDGAKEIVSE-VAGFIDIVEIGTPIVINEGLHAVKAIKEAFPALTVLADLK 61 L + + + +++ + KA + +P A + Sbjct: 6 RLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAML 65 Query: 62 IMDAGGYEVMKAAEAGADIVTVLGVSDDSTIKGAVEEAKKSGREILVDLINVKDIAARAA 121 + G + + + + R L L V A Sbjct: 66 ELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVV 125 Query: 122 EVDALGVDYVCVHSGYDHQAEGKNSFADLQAIKSVVKQAK--TAIAGGIKLNTLPEVIAA 179 A G + V + + K + K++ +I Sbjct: 126 LNTAFGWPTIAVDTHIFRVCNRTQF---APGKNVEQVEEKLLKVVPAEFKVDCHHWLILH 182 Query: 180 GPDLVIVGGGITGESDQKAAAAEMKRLVSQA 210 Sbjct: 183 213 >STM4386 [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 211 Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 0/209 (0%), Positives = 0/209 (0%), Gaps = 3/209 (1%) Query: 3 LQLALDLVNIDGAKEIVSEVAGFIDIVEIGTPIVINEGLHAVKAIKEAFPALTVLADLKI 62 L + + + I + +V + + Sbjct: 6 RLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAML 65 Query: 63 MDAGGYEVMKAAEAGADIVTVLGVSDDSTIKGAVEEAKKSGREILVDLINVKDIAARAAE 122 G + I + ++ + Sbjct: 66 ELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVV 125 Query: 123 VDALGVDYVCVHSGYDHQAEG-KNSFADLQAIKSVVKQA-KTAIAGGIKLNTLPEVIAAG 180 ++ + + + FA + ++ V ++ K A ++ Sbjct: 126 LNT-AFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGR 184 Query: 181 PDLVIVGGGITGESDQKAAAAEMKRLVSQ 209 Sbjct: 185 213 >sgaH [G] COG0269 3-hexulose-6-phosphate synthase and related proteins Length = 216 Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 104/209 (49%), Gaps = 3/209 (1%) Query: 3 LQLALDLVNIDGAKEIVSEVAGFIDIVEIGTPIVINEGLHAVKAIKEAFPALTVLADLKI 62 LQ+ALD +D A E +A +DI+E+GT + + EG+ AV+ +K +P VLAD KI Sbjct: 6 LQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKI 65 Query: 63 MDAGGYEVMKAAEAGADIVTVLGVSDDSTIKGAVEEAKKSGREILVDLINVKDIAARAAE 122 DAG EA AD VTV+ +D +T KGA++ AK+ ++ ++L Sbjct: 66 ADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQW 125 Query: 123 VDALGVDYVCVHSGYDHQAEG-KNSFADLQAIKSVVKQA-KTAIAGGIKLNTLPEVIAAG 180 DA G+ V H D QA G AD+ AIK + K + GG+ L LP Sbjct: 126 RDA-GIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIP 184 Query: 181 PDLVIVGGGITGESDQKAAAAEMKRLVSQ 209 + I G I + AA + KR +++ Sbjct: 185 IHVFIAGRSIRDAASPVEAARQFKRSIAE 213 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,760,796 Number of extensions: 651167 Number of successful extensions: 2378 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 2373 Number of HSP's successfully gapped: 14 Length of query: 210 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 108 Effective length of database: 26,614,363 Effective search space: 2874351204 Effective search space used: 2874351204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 113 (48.1 bits)