BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0016.p
         (77 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM2756 [M] COG0794 Predicted sugar phosphate isomerase involved...    51   3e-07

>STM2756 [M] COG0794 Predicted sugar phosphate isomerase involved in capsule
           formation
          Length = 187

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 3   VTLSPESSIGLLADHVVKLPGAPKEQADGGRIT--IQPMASLFEQTLLLFYDAVILRMME 60
           +T+ PES++G LA   V++P    +  DG      I P  SLFE+ +++  DA+I+ + +
Sbjct: 111 LTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVLGDAMIVNLAQ 170

Query: 61  ETGQTSTRMFGNHANLE 77
            TG   T+ F  HANLE
Sbjct: 171 STGYRLTKGFALHANLE 187


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,169,362
Number of extensions: 159047
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 77
Length of database: 38,378,431
Length adjustment: 48
Effective length of query: 29
Effective length of database: 32,842,399
Effective search space: 952429571
Effective search space used: 952429571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)