BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0014.p
         (124 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yckH [K] COG1733 Predicted transcriptional regulators              155   2e-38
FN1904 [K] COG1733 Predicted transcriptional regulators               124   2e-29
CAC2934 [K] COG1733 Predicted transcriptional regulators              124   5e-29
BS_ydeP [K] COG1733 Predicted transcriptional regulators              120   3e-28
CAC1483 [K] COG1733 Predicted transcriptional regulators              117   4e-27

>BS_yckH [K] COG1733 Predicted transcriptional regulators
          Length = 120

 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 88/106 (83%)

Query: 7   DRINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRE 66
            R++ K  NCEKELTLAVIGGKWK++ILWHLG EGTKRF+ELK LIP ITQK+L NQLRE
Sbjct: 2   SRMDDKRFNCEKELTLAVIGGKWKMLILWHLGKEGTKRFNELKTLIPDITQKILVNQLRE 61

Query: 67  LEEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGE 112
            E+D +V R+VY  VPP+VEYSLT +G+SL+P+L  MY+WGK Y E
Sbjct: 62  REQDMIVHREVYPVVPPKVEYSLTPHGESLMPILEAMYEWGKGYME 107


>FN1904 [K] COG1733 Predicted transcriptional regulators
          Length = 148

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 77/103 (74%)

Query: 12  KEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRELEEDQ 71
           K+ NC  E TL ++GGKWK IIL+++ +    R SELK+ IP I ++MLT QLRELEED 
Sbjct: 34  KKYNCFFEFTLDIVGGKWKPIILYYININSVARHSELKRFIPSINERMLTRQLRELEEDN 93

Query: 72  LVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENV 114
           L+ R+VY  VPP+VEY LTEYG+SL+P+L+ +  WGK+Y + +
Sbjct: 94  LIERKVYPVVPPKVEYKLTEYGKSLIPILKSLVLWGKDYAKAI 136


>CAC2934 [K] COG1733 Predicted transcriptional regulators
          Length = 112

 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 8   RINLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLREL 67
           + N  E  C  ELTL +IGGKWK++ILWHLG +GT RF EL K +P ITQKMLT QLR L
Sbjct: 3   KYNDTEYQCSMELTLDIIGGKWKVLILWHLG-KGTLRFGELMKTLPKITQKMLTQQLRSL 61

Query: 68  EEDQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGE 112
           EE  L+ R VYA VPP+VEYSLT+ G+SLLP+L  +  W  +Y E
Sbjct: 62  EETGLINRFVYASVPPKVEYSLTDTGKSLLPILENLRQWALDYIE 106


>BS_ydeP [K] COG1733 Predicted transcriptional regulators
          Length = 759

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 3/100 (3%), Positives = 15/100 (15%), Gaps = 1/100 (1%)

Query: 15  NCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRELEEDQLVF 74
             +            +  ++            +         +   +  + E     + +
Sbjct: 17  AVKSVANAVRKQMDIRQDVIAMF-DMNKPEGFDCPGCAWPDPKHSASFDICENGAKAIAW 75

Query: 75  RQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGENV 114
                +V        T           +            
Sbjct: 76  EVTDKQVNASFFAENTVQSLLTWGDHELEAAGRLTQPLKY 115


>CAC1483 [K] COG1733 Predicted transcriptional regulators
          Length = 108

 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 1/104 (0%)

Query: 10  NLKEINCEKELTLAVIGGKWKLIILWHLGLEGTKRFSELKKLIPHITQKMLTNQLRELEE 69
           ++K  +C  + T+++IGGK+K +IL+HL +  T RF+EL KLIP  T KMLT QLRELE 
Sbjct: 3   DIKTFSCPVDATISLIGGKYKAVILFHL-IGKTLRFNELHKLIPKATPKMLTQQLRELES 61

Query: 70  DQLVFRQVYAEVPPRVEYSLTEYGQSLLPVLRMMYDWGKNYGEN 113
           D L+ R VYA VPP+ EYSL+ +G+S++PV+  M DWG  Y E 
Sbjct: 62  DGLIIRTVYAVVPPKTEYSLSNFGESIIPVINSMCDWGAKYLET 105


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,545,078
Number of extensions: 339451
Number of successful extensions: 714
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 77
Length of query: 124
Length of database: 38,378,431
Length adjustment: 90
Effective length of query: 34
Effective length of database: 27,998,371
Effective search space: 951944614
Effective search space used: 951944614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)