BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0003.p (383 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr0530 [G] COG1175 ABC-type sugar transport systems, permease c... 263 2e-70 AGc1048 [G] COG1175 ABC-type sugar transport systems, permease c... 227 3e-59 BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c... 112 7e-25 ML1426 [G] COG1175 ABC-type sugar transport systems, permease co... 109 7e-24 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 105 1e-22 >slr0530 [G] COG1175 ABC-type sugar transport systems, permease components Length = 279 Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 138/276 (50%), Positives = 173/276 (62%), Gaps = 2/276 (0%) Query: 106 IFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGLSNYAAIFSDHLMATALRNNLLWV 165 +++ PA++ L L+LP L T+YLSFF+ S FVGL NY F+DH M A RNNLLW+ Sbjct: 1 MYVTPALLFLSAYLILPTLETVYLSFFDGRSRNFVGLKNYVFAFTDHTMLVAFRNNLLWL 60 Query: 166 FIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAISFVAAGVIWKFVYYYQP-GDEQI 224 + T VS GL+IA+L D+ YE IAKSIIF+PMAISFV A VIWKFVY Y+P G EQI Sbjct: 61 VLVTGISVSLGLIIAVLVDKVRYEAIAKSIIFLPMAISFVGASVIWKFVYAYRPAGAEQI 120 Query: 225 GLLNAIVTYFGGEPQAWTSMLQPWNNFFLIVILIWMQTGFAMVIFSAAIKGVPDDILEAA 284 GLLNAIVT G P W + + NNF LI I+IW+ TGF MVI SAA+KG+P D++EAA Sbjct: 121 GLLNAIVTSLGFAPVGWL-VERSVNNFALIAIMIWLYTGFCMVILSAAVKGIPADVIEAA 179 Query: 285 RVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXDVVMVMTGGQYDTEVVATQFYR 344 R+DGA +IF+ I IP I + D+V VMTGG TEV+A+ + Sbjct: 180 RIDGANSWQIFWRITIPMIRSTLLVVSTTMVILVLKVFDIVFVMTGGNQGTEVIASLMIK 239 Query: 345 QFFMYRNFGYGSTXXXXXXXXXXXXXXXXXRQFRKQ 380 + F YRNFG GST R+F+ Q Sbjct: 240 EMFNYRNFGRGSTIAVILLLLIVPVMITNIRRFKAQ 275 >AGc1048 [G] COG1175 ABC-type sugar transport systems, permease components Length = 132 Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 0/257 (0%), Positives = 0/257 (0%), Gaps = 6/257 (2%) Query: 99 RRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASSEKFVGLSNYAAIFSDHLMATAL 158 P + L +R + + F + + Sbjct: 51 GGGGTKGAVPKPVIRFLNEPSNRNLIRGVIAAGNTNFGAAFASAGDIVSRKCAVPFLYRF 110 Query: 159 RNNLLWVFIGTLACVSFGLLIAILADRSSYEKIAKSIIFMPMAISFVAAGVIWKFVYYYQ 218 Sbjct: 111 170 Query: 219 -PGDEQIGLLNAIVTYFGGEPQAWTSMLQP-WNNFFLIVILIWMQTGFAMVIFSAAIKGV 276 Sbjct: 171 -- 228 Query: 277 PDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXDVVMVMTGGQYDTE 336 Sbjct: 229 288 Query: 337 VVATQFYRQFFMYRNFG 353 Sbjct: 289 -- 303 >BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 78/275 (28%), Positives = 141/275 (51%), Gaps = 30/275 (10%) Query: 99 RRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFNASS----EKFVGLSNYAAIFSDHLM 154 + K++PY+F+ PA++ L ++ + P ++LS F SS + F+GL NY +F D + Sbjct: 4 QNKIIPYLFLVPALVFLLFVYI-PIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVF 62 Query: 155 ATALRNNLLWVFIGTLACVSFG--LLIAILADR--SSYEKIAKSIIFMPMAISFVAAGVI 210 AL NN+L+ I ++ C FG +L A+L D+ + +++ F+P+ IS ++ Sbjct: 63 YQALTNNVLYAVI-SIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALL 121 Query: 211 WKFVYYYQPGDEQIGLLNAIVTYFGGE--PQAW-----TSMLQPWNNFFLIVILIWMQTG 263 + F+Y + + GLLN ++ G + +AW T+ML +I + W G Sbjct: 122 FDFIY-----NPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLS------VIFVSQWQSVG 170 Query: 264 FAMVIFSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXD 323 + +++ +I+ +PD++ EAAR+DGAG+++ FF I +P + Sbjct: 171 YIAMLYIVSIQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFN 230 Query: 324 VVMVMTGG--QYDTEVVATQFYRQFFMYRNFGYGS 356 ++TGG +EV++T Y+ F GY S Sbjct: 231 EPYILTGGGPGKASEVLSTFLYKSAFTKDMMGYAS 265 >ML1426 [G] COG1175 ABC-type sugar transport systems, permease components Length = 319 Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 17/272 (6%) Query: 95 PDHIRRKVLPYIFIGPAVIILGWLLVLPALRTLYLSFFN---ASSEKFVGLSNYAAIF-S 150 P RR +FI P + + ++ P +LY+SF + FVGL+N+ +F S Sbjct: 22 PPSRRRAWAGRMFIAPNLASVSVFMLFPLGFSLYMSFQKWDMFTPPVFVGLANFQNLFTS 81 Query: 151 DHLMATALRNNLLWVFIGTLACVSFGLLIA-ILADRSSYEKIAKSIIFMPMAISFVAAGV 209 D L AL N++++ + V L++A +L + I ++I+F+P+AIS V V Sbjct: 82 DPLFLIALCNSVVFTVGTVIPTVLISLVVAGVLNQKVKGIGIFRTIVFLPLAISSVVMAV 141 Query: 210 IWKFVYYYQPGDEQIGLLNAIVTYFGGEPQAWTSMLQP-WNNFFLIVILIWMQTGFAMVI 268 +W+F++ + GLLN ++ + G P W ++ P W L ++ +W FA V+ Sbjct: 142 VWQFIF-----NTHNGLLNIMLGWIGIGPIPW--LVNPGWAMASLCIVSVWRSVPFATVV 194 Query: 269 FSAAIKGVPDDILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXDVVMVM 328 AA++ VP + EAA++DGAGE++ F I +PFI D+V V+ Sbjct: 195 LLAAMQEVPKTVYEAAKIDGAGEIRQFISITVPFIRGAISFVVVISFIHAFQTFDLVYVL 254 Query: 329 T----GGQYDTEVVATQFYRQFFMYRNFGYGS 356 G + T V+ ++ F + FGY S Sbjct: 255 NGPNGGPELATYVLGIMLFQHAFSFLEFGYAS 286 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 17/261 (6%) Query: 106 IFIGPAVIILGWLLVLPALRTLYLSFFN---ASSEKFVGLSNYAAIF-SDHLMATALRNN 161 +F+ P + + ++ P +LY+SF + FV L N+ +F SD L A+ N Sbjct: 14 MFVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRNLFTSDPLFLIAVVNT 73 Query: 162 LLWVFIGTLACVSFGLLIAILADRSSYE-KIAKSIIFMPMAISFVAAGVIWKFVYYYQPG 220 ++ + V L++A +R + ++++F+P+AIS V V+W+FV+ Sbjct: 74 AVYTVGTVVPTVIVSLVVAAFLNRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF----- 128 Query: 221 DEQIGLLNAIVTYFGGEPQAWTSMLQP-WNNFFLIVILIWMQTGFAMVIFSAAIKGVPDD 279 + GLLN ++ + G P W +++P W L ++ +W FA V+ AA++GVP+ Sbjct: 129 NTDNGLLNIMLGWLGIGPIPW--LIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPET 186 Query: 280 ILEAARVDGAGEVKIFFGIMIPFISAXXXXXXXXXXXXXXXXXDVVMVMTGG----QYDT 335 + EAAR+DGAGE++ F I +P I D+V V+TG + T Sbjct: 187 VYEAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETAT 246 Query: 336 EVVATQFYRQFFMYRNFGYGS 356 V+ ++ F + FGY S Sbjct: 247 YVLGIMLFQHAFSFLEFGYAS 267 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,817,830 Number of extensions: 894239 Number of successful extensions: 2929 Number of sequences better than 1.0e-05: 156 Number of HSP's gapped: 2679 Number of HSP's successfully gapped: 156 Length of query: 383 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 275 Effective length of database: 25,922,359 Effective search space: 7128648725 Effective search space used: 7128648725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 117 (49.7 bits)