BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0002.p (363 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1050 [G] COG0395 ABC-type sugar transport system, permease co... 280 3e-75 slr0531 [G] COG0395 ABC-type sugar transport system, permease co... 274 1e-73 APE0040 [G] COG0395 ABC-type sugar transport system, permease co... 175 8e-44 PH1036 [G] COG0395 ABC-type sugar transport system, permease com... 170 3e-42 PAE1322 [G] COG0395 ABC-type sugar transport system, permease co... 158 2e-38 >AGc1050 [G] COG0395 ABC-type sugar transport system, permease component Length = 386 Score = 280 bits (715), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 153/377 (40%), Positives = 216/377 (57%), Gaps = 63/377 (16%) Query: 28 PTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETL---QLSKDTDLRQPIEVNGQTYTD 84 PTLG+ +SS R I +GWW F E T L + K R I G + + Sbjct: 31 PTLGILVSSLRDKDQITVSGWWTAFSSSEQTAAVRLADASVQKQDGSRYVIA--GNVFEN 88 Query: 85 DQ----------------LKAGVKVD-----------------DSRLMWENRRARTINVQ 111 Q KAG D + +E R + + + Sbjct: 89 GQGGKVAAFGVRVQEPTAFKAGEAADIGDGETLLVNSDGTYEYSKAVSFEGSRGKRVYIS 148 Query: 112 EQGWKTIPDFTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIPV 171 T P FT+DNY VL+ + G+ Q+F N+LT+AVPATVIP+ Sbjct: 149 V---ATPPVFTLDNYRTVLTSE-----------------GIGQSFVNSLTVAVPATVIPI 188 Query: 172 LIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGL-----NGSYLG 226 LIA+FAAYA +W+ F GR L +++ ++V+P+Q++LIP+L+ Y +G + +Y G Sbjct: 189 LIAAFAAYALSWMNFSGRNLLIAMVVGLIVVPLQMSLIPLLRLYNEIGTIFGVPSKTYAG 248 Query: 227 IWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGI 286 IWLAHTAFGLPL Y + N+IS LPK++ ESA +DGAS F IF ++ILPLS PALAS I Sbjct: 249 IWLAHTAFGLPLAIYLLRNYISGLPKEIIESARVDGASDFEIFVKIILPLSFPALASFAI 308 Query: 287 FQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFF 346 FQFLW WND LV+++F+G Q V++ + L+GSRG +W +LT++AF+++++PL +FF Sbjct: 309 FQFLWTWNDLLVAMVFLGTQKDELVLTGALNALLGSRGGNWEILTASAFVTIIVPLGVFF 368 Query: 347 LLQKYFVRGLMGGSVKG 363 LQ+Y VRGL+ GSVKG Sbjct: 369 ALQRYLVRGLLAGSVKG 385 >slr0531 [G] COG0395 ABC-type sugar transport system, permease component Length = 298 Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 155/359 (43%), Positives = 217/359 (60%), Gaps = 77/359 (21%) Query: 4 KKKRKGSKTIVNLVLGVICFIWLLPTLGLFISSFRPAADILQTGWWKVFPHQEWTQGETL 63 +K K +++ + I FIW LP+LGLFISS RP +G+ L Sbjct: 16 RKTEFWQKLPIHIAILTIAFIWTLPSLGLFISSLRP-------------------RGDML 56 Query: 64 QLSKDTDLRQPIEVNGQTYTDDQLKAGVKVDDSRLMWENRRARTINVQEQGWKTIPDFTM 123 T P+E+ F + Sbjct: 57 STGWWTVFWHPLEIT-----------------------------------------QFYL 75 Query: 124 DNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIPVLIASFAAYAFAW 183 NY +VL + +G+ +AF N+LTIAVPATVIP+ IA+FAAYAFAW Sbjct: 76 GNYGDVL-----------------RSSGMGEAFLNSLTIAVPATVIPIAIATFAAYAFAW 118 Query: 184 LRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYLGIWLAHTAFGLPLVTYFM 243 + FPGR+ LF++++ +LV+P+Q LIPVL+ Y LGL G++LG+WLAHTA+GLPL Y + Sbjct: 119 MTFPGRQLLFILVVCLLVVPLQTTLIPVLRVYAQLGLAGTFLGVWLAHTAYGLPLGIYLL 178 Query: 244 YNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFLWVWNDYLVSLIFI 303 N+I LPKDL E+A +DGASH IF++LI+PLS+PA+AS +FQFLWVWND LV+L+++ Sbjct: 179 RNYIGALPKDLIEAAAVDGASHLKIFTKLIVPLSMPAIASFAVFQFLWVWNDLLVALVYL 238 Query: 304 GNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFFLLQKYFVRGLMGGSVK 362 G V +++++++LVGSRG DW+LLT+ AFISM++PL +FF LQ+YFVRG++ GSVK Sbjct: 239 GGTADVAPVTIQLSNLVGSRGQDWYLLTAGAFISMIVPLMVFFGLQRYFVRGILAGSVK 297 >APE0040 [G] COG0395 ABC-type sugar transport system, permease component Length = 302 Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 98/257 (38%), Positives = 157/257 (61%), Gaps = 18/257 (7%) Query: 109 NVQEQGWKTIPD--FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPA 166 V +GW I D FTMDNY S Y + S + N+L +A+PA Sbjct: 62 EVIVKGWWNIVDATFTMDNYIKAWSYDPYSV---------------SGGYINSLIVALPA 106 Query: 167 TVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYLG 226 TVIPV ASFAAY F+ FP + LF++ I ++ +P Q+ ++P+ +LGL ++ G Sbjct: 107 TVIPVAAASFAAYGFSRFSFPLKSYLFLVTILLMALPQQIVVVPLFLLLKNLGLINTFPG 166 Query: 227 IWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGI 286 I L H+A+G+ + +FM NF LP+++ E+A +DGAS F IF +++LP+S+P + S + Sbjct: 167 IILVHSAWGMAWIIFFMKNFFDILPREVEEAARVDGASDFRIFYKIVLPMSLPGILSASV 226 Query: 287 FQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFF 346 QF WVW+ + LIF+ + PS V++ +IA++ G+ DW L+ + + +M +PLA++ Sbjct: 227 LQFTWVWSSFFFELIFLID-PSKWVITQRIANMKGTYLVDWGLIAAGSVFAMAVPLAVYM 285 Query: 347 LLQKYFVRGLMGGSVKG 363 LLQ+Y++RG +G + KG Sbjct: 286 LLQRYYIRGFVGWAAKG 302 >PH1036 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 154/252 (61%), Gaps = 18/252 (7%) Query: 113 QGWKTIPDFT--MDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVPATVIP 170 GW + FT + NY N L+ + + G GL N+L +A+P+T++P Sbjct: 40 SGWWHLHPFTITLKNYINALNHPMFPI-----------GEGLK----NSLIVAIPSTIVP 84 Query: 171 VLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYLGIWLA 230 V++AS AAYAFA FP + LF I+ ++ +P Q+ ++P+ + L ++ G+ + Sbjct: 85 VIVASLAAYAFARYSFPIKHYLFAFIVLLMALPQQMTVVPLYFLLRNAHLLNTFRGLIIV 144 Query: 231 HTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIGIFQFL 290 H+A+GL + +FM N+ S LP D+ E+A IDGA+ F IF +++LP+++P L S I QF Sbjct: 145 HSAWGLAWIIFFMRNYFSMLPTDVEEAAKIDGATDFQIFYKIVLPMALPGLISASILQFT 204 Query: 291 WVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIFFLLQK 350 WVW+D+ ++L+F+ N P V + ++ L G DW LLT+A+ + ML+PL ++ L QK Sbjct: 205 WVWSDFFLALVFLQN-PEKYVATQRLPLLRGQYFVDWGLLTAASIMVMLVPLLVYALFQK 263 Query: 351 YFVRGLMGGSVK 362 Y++ G++G SV+ Sbjct: 264 YYISGMIGWSVE 275 >PAE1322 [G] COG0395 ABC-type sugar transport system, permease component Length = 277 Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 146/257 (56%), Gaps = 19/257 (7%) Query: 109 NVQEQGWKTIPD---FTMDNYNNVLSGKEYKLTEADGSETVQKGTGLSQAFWNTLTIAVP 165 V QGW +PD T+ NY L Y L TGL N+L +A Sbjct: 36 EVVIQGWLRVPDPESITLKNYLEALFNPVYDL-----------ATGLR----NSLLVASL 80 Query: 166 ATVIPVLIASFAAYAFAWLRFPGRKTLFVIIIAMLVIPIQVALIPVLKDYTSLGLNGSYL 225 AT+I + AS AYAF L F + LF+III +++ P Q++++P+ Y LGL S Sbjct: 81 ATLIALFAASLFAYAFVNLPFRMKTFLFMIIIFIMMAPQQISVVPLFFLYLQLGLYDSLP 140 Query: 226 GIWLAHTAFGLPLVTYFMYNFISQLPKDLFESAFIDGASHFTIFSRLILPLSVPALASIG 285 GI L H+A+G T+F+ N+ + +P+ L E+A++DGA + IF R++LPL+ P L + Sbjct: 141 GIILLHSAWGTAWATFFLRNYFALIPRSLVEAAWVDGARDWQIFRRIVLPLAKPGLIAAA 200 Query: 286 IFQFLWVWNDYLVSLIFIGNQPSVQVMSMKIADLVGSRGNDWHLLTSAAFISMLMPLAIF 345 + Q+ WVWND +L+F+ + + QV++ K+ L G DW LL++ + +SM +PL ++ Sbjct: 201 LLQYTWVWNDLFYALVFLSSNVN-QVITQKVVFLKGEFHVDWGLLSAGSVLSMSIPLVLY 259 Query: 346 FLLQKYFVRGLMGGSVK 362 L KYF RG+ G VK Sbjct: 260 VLFNKYFARGVAGWGVK 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,409,688 Number of extensions: 1163388 Number of successful extensions: 11150 Number of sequences better than 1.0e-05: 202 Number of HSP's gapped: 10979 Number of HSP's successfully gapped: 203 Length of query: 363 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 255 Effective length of database: 25,922,359 Effective search space: 6610201545 Effective search space used: 6610201545 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)