BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0011.p (232 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0755 [TK] COG0745 Response regulators consisting of a CheY-lik... 203 2e-52 CAC0224 [TK] COG0745 Response regulators consisting of a CheY-li... 189 3e-48 BH0271 [TK] COG0745 Response regulators consisting of a CheY-lik... 188 5e-48 lin1856 [TK] COG0745 Response regulators consisting of a CheY-li... 187 2e-47 CAC0371 [TK] COG0745 Response regulators consisting of a CheY-li... 182 3e-46 >BH0755 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 232 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/196 (51%), Positives = 134/196 (68%) Query: 33 DFNRVLETFEQAAPSLVLLDVNLPRYDGFYWCRQLRKSSLCPILFISARDSGMDQVMALE 92 DF+ + + F P LVLLD+NLP +DGFYWCRQLR+ S PI+F+SAR S MDQV A+E Sbjct: 33 DFDMIKQDFLDYRPDLVLLDINLPAFDGFYWCRQLRRLSNLPIIFLSARASEMDQVYAIE 92 Query: 93 NGGDDYITKPFQYEVVLAKIRSHLRRAYGSYAQSQEERRLETGGLTLLPERYIIQYAGQS 152 NGGDDYITKPF EV+LAK++ LRR+YG YA + LE GL +R I+ GQ Sbjct: 93 NGGDDYITKPFHLEVLLAKVKGVLRRSYGDYAIPLNQNILEVDGLFFYRDRNTIELNGQK 152 Query: 153 AELTQKEAVLLEALMLKEGRVVTRERLLDLMWEDQHFIDDNTLNVYITRVRKKLKDLGLE 212 E + KE LL L +V+R++LL+ +W++ F+DDNTLNV I R R++L+D+G+ Sbjct: 153 VECSPKEFRLLICLAEHVENIVSRDKLLEAIWDEIDFVDDNTLNVNIRRGRRRLEDIGIT 212 Query: 213 EIVETVRGAGYRLSAS 228 + ++TVRG GY L S Sbjct: 213 DAIQTVRGQGYCLKKS 228 >CAC0224 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 223 Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 134/198 (67%), Gaps = 3/198 (1%) Query: 26 FRTVVVEDFNRVLETFEQAAPSLVLLDVNLPRYDGFYWCRQLRKSSLCPILFISARDSGM 85 F VEDFN + E F + P+LVL+D+NLP DGFYWC ++R S P++F+S+R S M Sbjct: 26 FEAHAVEDFNDIFEQFVKVKPNLVLMDINLPVCDGFYWCSKIRNISKVPVIFLSSRSSNM 85 Query: 86 DQVMALENGGDDYITKPFQYEVVLAKIRSHLRRAYGSYAQSQEERRLETGGLTLLPERYI 145 D VMA+ GGDDYITKPF E+++AKI + LRR Y SY++++ + +E + + + Sbjct: 86 DVVMAVNMGGDDYITKPFSIEILMAKINAILRRTY-SYSETEMD-TIEFKDVIISLKNNT 143 Query: 146 IQYAGQSAELTQKEAVLLEALMLKEGRVVTRERLLDLMWEDQHFIDDNTLNVYITRVRKK 205 + Y S ELT+ E ++ LM +V+RE+++ +W+D+ FIDDNTL V I R+RKK Sbjct: 144 VYYNENSIELTKNEFKIIYVLMKNHDSIVSREKIMQELWQDESFIDDNTLTVNINRLRKK 203 Query: 206 LKDLGLEEIVETVRGAGY 223 LK++G+ + ++T++G GY Sbjct: 204 LKEIGV-DFIKTIKGQGY 220 >BH0271 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 230 Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 140/230 (60%) Query: 1 MDTILIVEXXXXXXXXXXXXXXXXXFRTVVVEDFNRVLETFEQAAPSLVLLDVNLPRYDG 60 M ILIVE + +EDF RVL+ F++ P LV++D+NLP +DG Sbjct: 1 MYRILIVEDERSITHTLKKRLEKYGYECHTIEDFKRVLDVFQETEPHLVIMDINLPYFDG 60 Query: 61 FYWCRQLRKSSLCPILFISARDSGMDQVMALENGGDDYITKPFQYEVVLAKIRSHLRRAY 120 +YW R++R+ S CPI+ +SAR S +DQV +ENG DD+ITKPF +VVLAKI +RR Y Sbjct: 61 YYWSRKIRQISTCPIMILSARMSELDQVYGIENGADDFITKPFVMDVVLAKINGQIRRTY 120 Query: 121 GSYAQSQEERRLETGGLTLLPERYIIQYAGQSAELTQKEAVLLEALMLKEGRVVTRERLL 180 G YA++ E R ++ G TL + + Q LT KE L VVTR+RLL Sbjct: 121 GEYAKNTERRIVQLGNTTLNLDTVRLSTPKQEEVLTVKELQLCTMFFEDFPNVVTRQRLL 180 Query: 181 DLMWEDQHFIDDNTLNVYITRVRKKLKDLGLEEIVETVRGAGYRLSASGD 230 ++W+++ F+++NTL V I R+RKKL+++ ++T+RG GY+L+ + Sbjct: 181 SVIWDEEGFVEENTLTVNIKRLRKKLENVQSSLELKTIRGIGYQLTVKDE 230 >lin1856 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 225 Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 133/200 (66%), Gaps = 1/200 (0%) Query: 26 FRTVVVEDFNRVLETFEQAAPSLVLLDVNLPRYDGFYWCRQLRKSSLCPILFISARDSGM 85 F VV+DFN +L+ F P LV+LDVNLP +DGFYWC Q+R+ S PI+F+S+R+S M Sbjct: 26 FEIGVVDDFNNILQEFLSFEPQLVILDVNLPFFDGFYWCNQIREVSNVPIIFLSSRNSRM 85 Query: 86 DQVMALENGGDDYITKPFQYEVVLAKIRSHLRRAYGSYAQSQEERRLETGGLTLLPERYI 145 DQ+M + G D YI KP +V++A+I + LRR Y SYA +E +E + L + Sbjct: 86 DQIMGMNMGADYYIEKPVDLDVLMARINALLRRTY-SYADLEEANVMEHNNVFLHIDTNT 144 Query: 146 IQYAGQSAELTQKEAVLLEALMLKEGRVVTRERLLDLMWEDQHFIDDNTLNVYITRVRKK 205 + + ELT+ E ++L LM ++G +V+R+ ++ +WED+ F+DDNTL V + R+RKK Sbjct: 145 LTHLEDKIELTKNEFLILYELMKQKGSIVSRDEIMRALWEDESFVDDNTLTVNVVRIRKK 204 Query: 206 LKDLGLEEIVETVRGAGYRL 225 L ++GL+E ++T +G GY + Sbjct: 205 LAEIGLDEFIKTKKGQGYMI 224 >CAC0371 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 228 Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 137/229 (59%), Gaps = 1/229 (0%) Query: 1 MDTILIVEXXXXXXXXXXXXXXXXXFRTVVVEDFNRVLETFEQAAPSLVLLDVNLPRYDG 60 M ILI+E + + DF +V E FE+ P LVLLDVNLP YDG Sbjct: 1 MYKILIIEDDKKLAEFTEEYLKRYNYEVFKIFDFKKVEEEFEKINPELVLLDVNLPYYDG 60 Query: 61 FYWCRQLRKSSLCPILFISARDSGMDQVMALENGGDDYITKPFQYEVVLAKIRSHLRRAY 120 F CR R+ S PI+F+SAR S ++Q+ LE G DDYITKPF +E++LAK+++ +RR Y Sbjct: 61 FNLCRIFRRKSKAPIIFMSARSSEIEQIRGLEMGADDYITKPFSFELLLAKVQASIRRTY 120 Query: 121 GSYAQSQEERRLETGGLTLLPERYIIQYAGQSAELTQKEAVLLEALMLKEGRVVTRERLL 180 G Y++ E L G+ + + + Y + ELT+ E L+ L+ +VVTRE LL Sbjct: 121 GEYSEDNSE-VLTVSGIIVDKNTFKMTYKDKEVELTKNELKLITKLLKNINKVVTREELL 179 Query: 181 DLMWEDQHFIDDNTLNVYITRVRKKLKDLGLEEIVETVRGAGYRLSASG 229 + +W++ F+DDNTL V +TR++ KL ++G++ +V+ RG GY L G Sbjct: 180 EELWDESSFVDDNTLTVNVTRIKNKLSEVGIKNVVKNKRGIGYYLDFKG 228 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,460,011 Number of extensions: 622747 Number of successful extensions: 2196 Number of sequences better than 1.0e-05: 277 Number of HSP's gapped: 1944 Number of HSP's successfully gapped: 278 Length of query: 232 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 129 Effective length of database: 26,499,029 Effective search space: 3418374741 Effective search space used: 3418374741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)