BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0042.0003.p (259 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport sys... 323 2e-88 BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport sys... 322 4e-88 BH0753 [V] COG1136 ABC-type antimicrobial peptide transport syst... 292 3e-79 BH0273 [V] COG1136 ABC-type antimicrobial peptide transport syst... 283 2e-76 lin1859 [V] COG1136 ABC-type antimicrobial peptide transport sys... 263 2e-70 >BS_yxdL [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 323 bits (827), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 14/255 (5%), Positives = 45/255 (17%) Query: 5 NVLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSSG 64 + L G ++ D + + + + S Sbjct: 3 QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKS 62 Query: 65 VVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMDA 124 V + + +++ F +Q +T + R + Sbjct: 63 AVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGE 122 Query: 125 LLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRIV 184 + ++D + ++ + R + + + Sbjct: 123 FTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLN 182 Query: 185 MESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDTL 244 E A + + + Sbjct: 183 ETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242 Query: 245 SFWGGNSHELSSIRV 259 + + R Sbjct: 243 VYGTCMPMLNLTRRK 257 >BS_yvcR [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 322 bits (825), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 15/258 (5%), Positives = 47/258 (18%), Gaps = 3/258 (1%) Query: 4 MNVLEVTALNKVY---PGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQ 60 M+ + ++ + + M +G + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 PSSGVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLA 120 S+ + + + + ++ + F L + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 EMDALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNS 180 + L ++ ++ L + PT Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 SRIVMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKI 240 S + + +E + D + G + I Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFI 240 Query: 241 IDTLSFWGGNSHELSSIR 258 + + Sbjct: 241 LTVYGTCMPMLNLTRRKG 258 >BH0753 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 19/254 (7%), Positives = 48/254 (18%), Gaps = 3/254 (1%) Query: 6 VLEVTALNKVY---PGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPS 62 + + +L ++ ++ + + Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 63 SGVVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEM 122 S V + P L + ++ F+ + L Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 123 DALLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSR 182 + + + L T S Q + M Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 183 IVMESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIID 242 +D + ++ A Y + + + Q+ I Sbjct: 182 NETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFIL 241 Query: 243 TLSFWGGNSHELSS 256 T+ L+ Sbjct: 242 TVYGTCMPMLNLTR 255 >BH0273 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 20/249 (8%), Positives = 48/249 (19%) Query: 6 VLEVTALNKVYPGKVNTQALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSSGV 65 + L + +L ++ ++ + + S V Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 66 VNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMDAL 125 + P L + ++ F+ + L + Sbjct: 65 ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFT 124 Query: 126 LHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRIVM 185 + + L T S Q + M Sbjct: 125 MPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNET 184 Query: 186 ESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRGDNRQAFFQKIIDTLS 245 +D + ++ A Y + + + Q+ I T+ Sbjct: 185 RPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVY 244 Query: 246 FWGGNSHEL 254 L Sbjct: 245 GTCMPMLNL 253 >lin1859 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 18/251 (7%), Positives = 47/251 (18%), Gaps = 2/251 (0%) Query: 6 VLEVTALNKVYPGKVNT-QALTDIHLSIEQGEFVGIMGPSGSGKTTLLNMVSTIDQPSSG 64 + L G ++ +L ++ ++ + + S Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 65 VVNIGGSDPYLMNKKELALFRRRQLGFVFQDFNLLETLTVAENIVLPLTLDNRKLAEMDA 124 V + P L + ++ F+ + L + Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 125 LLHKVADRLNIKDILNKRTYEISGGQRQRTAIARAMITSPAIILADEPTGALDSNSSRIV 184 + + L T S Q + M Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 185 MESLEDINRKEGTTLMLVTHDPLAASYCNRIVFIKDGRLAAEIHRG-DNRQAFFQKIIDT 243 +D + ++ A Y + + + I+ Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTV 243 Query: 244 LSFWGGNSHEL 254 + Sbjct: 244 YGTCMPMLNLT 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,429,729 Number of extensions: 654492 Number of successful extensions: 18261 Number of sequences better than 1.0e-05: 2184 Number of HSP's gapped: 15345 Number of HSP's successfully gapped: 2430 Length of query: 259 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 155 Effective length of database: 26,383,695 Effective search space: 4089472725 Effective search space used: 4089472725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)