BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0006.p (288 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 393 e-109 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 232 5e-61 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 230 2e-60 TM0596 [G] COG1175 ABC-type sugar transport systems, permease co... 200 2e-51 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 190 2e-48 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/290 (66%), Positives = 232/290 (80%), Gaps = 4/290 (1%) Query: 2 KRR---EYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKL-V 57 KRR EY W Y FIA PI+GF +FA P+ YS+YVSFTD+ Y PV+ G DNY +L V Sbjct: 20 KRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFV 79 Query: 58 QDELFWKTLRNTLYSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTL 117 D+LF KT+ NT Y+AL IPIGM SLG A ALNQK++GI FRT FFLP +SSV+A+TL Sbjct: 80 TDDLFRKTVFNTFYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITL 139 Query: 118 LWKWIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQG 177 LW+WIFN +GLLN +L GI GP WLS E+WAMPAMIIQGVW GLGIN++LYLAALQG Sbjct: 140 LWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQG 199 Query: 178 VPRSFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNY 237 V + YEAA+IDG N WQ+F HITVP ISPTT +ILIT+ IGALQD+ RF IMTEGGPNY Sbjct: 200 VNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNY 259 Query: 238 STTTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHY 287 STTT+VYYLF NAFRYM MG+AS+MAW+LG+IIL +T++NF +++WVHY Sbjct: 260 STTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 232 bits (592), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 180/276 (65%), Gaps = 1/276 (0%) Query: 9 AYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDELFWKTLRN 68 AY FIA P+L +F +P+ +++VSFTDY +P + G DNY+K+ +D F +L+N Sbjct: 17 AYLFIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDPYFLISLKN 76 Query: 69 TL-YSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWKWIFNDTY 127 T+ Y+AL +P+G++ SLG A +N +G FRT F++P + S +A +W W+ N Y Sbjct: 77 TIIYTALFVPLGLVASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIWYWLLNPQY 136 Query: 128 GLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPRSFYEAAE 187 GL+N +L GI GPAWL WAM A+++ VW G N++++LA LQG+P + YEA++ Sbjct: 137 GLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLYEASK 196 Query: 188 IDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTTTIVYYLF 247 I+GA+ W+ FR++T P +S TT + II A Q + + ++T+GGP ST T+VYY++ Sbjct: 197 IEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLVYYIY 256 Query: 248 QNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRR 283 F + MG+AS+++++L LIIL +++N ++ Sbjct: 257 NEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKE 292 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/287 (42%), Positives = 186/287 (64%), Gaps = 1/287 (0%) Query: 2 KRREYLWAYSFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNYVKLVQDEL 61 +++ W F+ +LGFL+F IP+ S+ +SFTD+ T F G +NY +L D Sbjct: 6 RKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPE 65 Query: 62 FWKTLRNTLYSALS-IPIGMICSLGFATALNQKIQGIRFFRTMFFLPTISSVIALTLLWK 120 FWK+ RNT+ + +P MI L A LNQKI+ FFR ++FLP I+S +A++L+WK Sbjct: 66 FWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWK 125 Query: 121 WIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPR 180 W+FN +YGL+N+ L L GI GP WL+ Q AM A+II W +G +VL+L LQ + Sbjct: 126 WLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISP 185 Query: 181 SFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTT 240 S+YEAA +DGA+ ++ IT+P ++PTT ++ I ++I + Q + + IMTEGGP+ +T Sbjct: 186 SYYEAANMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATM 245 Query: 241 TIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHY 287 T+V ++ +AFRY MG+AS+M+WIL ++I +T++ +RW +Y Sbjct: 246 TLVQNIYNHAFRYFEMGYASAMSWILFIVIFIITIIQNKLQKRWSNY 292 >TM0596 [G] COG1175 ABC-type sugar transport systems, permease components Length = 420 Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/244 (43%), Positives = 157/244 (64%), Gaps = 5/244 (2%) Query: 49 GGDNYVKLVQDE-LFWKTLRNTLYSA-LSIPIGMICSLGFATALNQKIQGIRFFRTMFFL 106 G N++ +D+ LF K L NTLY LS+P + SL A LN ++ FFRT +F+ Sbjct: 175 GLVNFLLDAKDKNLFLKALTNTLYYVILSVPSQIFISLMIALLLNSNVKFRVFFRTAYFI 234 Query: 107 PTISSVIALTLLWKWIFNDTYGLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGI 166 P ++SV+A++L+WKWIFND +GLLN++L L I+ +WL E+W +P + I VW +G Sbjct: 235 PFVTSVVAISLVWKWIFNDEFGLLNYILSLFNIEPISWLKDERWTIPTIAIVSVWKTVGY 294 Query: 167 NIVLYLAALQGVPRSFYEAAEIDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPR 226 + V++LA LQ + RS+YEAAE+DGA+ Q+F +IT P +SPTT ++LI ++IGA + + Sbjct: 295 DAVIFLAGLQNIDRSYYEAAEVDGASSLQKFFYITWPLLSPTTFFLLIVSLIGAFKVFAE 354 Query: 227 FQIMTEGGP---NYSTTTIVYYLFQNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRR 283 ++ +G P N S T+VYY+F +R MG AS+ A+IL IIL T + + RR Sbjct: 355 VYVLYDGLPGPYNNSGMTLVYYVFDLFYRQQRMGIASAAAYILFAIILIFTFIQYRVGRR 414 Query: 284 WVHY 287 V Y Sbjct: 415 AVEY 418 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 168/281 (59%), Gaps = 5/281 (1%) Query: 11 SFIAAPILGFLLFAFIPLSYSVYVSFTDYSGYQTPVFNGGDNY-VKLVQDELFWKTLRNT 69 ++I+ I+G ++F P S ++SFT+Y PV+NG +NY L +D+LFWK++ T Sbjct: 10 AYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLFWKSMGVT 69 Query: 70 L-YSALSIPIGMICSLGFATALNQKIQGIRFFRTMFFLPTI-SSVIALTLLWKWIFNDTY 127 Y L+IP+ + +LG A LN K++GI FFRT F++P+I S +A+ +LW+ +F Sbjct: 70 FAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWRALFAID- 128 Query: 128 GLLNHLLELAGIQGPAWLSSEQWAMPAMIIQGVWSGLGINIVLYLAALQGVPRSFYEAAE 187 GLLN + + G + WL A+ ++ + VW G +V++LAALQ VP+S YEAA Sbjct: 129 GLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQ-FGSAMVIFLAALQNVPQSQYEAAM 187 Query: 188 IDGANGWQRFRHITVPCISPTTLYILITAIIGALQDYPRFQIMTEGGPNYSTTTIVYYLF 247 IDGA+ WQ F +TVP I+P + I A Q++ ++T GGP + T Y++ Sbjct: 188 IDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLFSLYIY 247 Query: 248 QNAFRYMNMGFASSMAWILGLIILAVTLLNFYFSRRWVHYE 288 AF+Y +MG+ +++AW+L L++ + F S+ WV Y Sbjct: 248 DTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYS 288 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,384,397 Number of extensions: 922748 Number of successful extensions: 3013 Number of sequences better than 1.0e-05: 170 Number of HSP's gapped: 2793 Number of HSP's successfully gapped: 171 Length of query: 288 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 183 Effective length of database: 26,268,361 Effective search space: 4807110063 Effective search space used: 4807110063 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)