BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0040.0005.p (291 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 189 7e-48 all0261 [G] COG0395 ABC-type sugar transport system, permease co... 175 9e-44 MT2099 [G] COG0395 ABC-type sugar transport system, permease com... 173 3e-43 Rv2039c [G] COG0395 ABC-type sugar transport system, permease co... 171 1e-42 lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 170 3e-42 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 189 bits (479), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 104/263 (39%), Positives = 156/263 (59%), Gaps = 1/263 (0%) Query: 28 YLFLSAGALVMAVPFLWMLSTSLKQQGMEFEMPPKWIPQHFEWSNYHFVLFESDIVQGFV 87 Y + G ++M +PF+WM+ST+ K +PP++IP+ +N+ V +++ + Sbjct: 20 YTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLM 79 Query: 88 NTXXXXXXPCLVGXXXXXXXXXXXXXXXXXXRNLLFGLLLATMMIPGVVTMIPTFMLFKN 147 N+ L R+ LF L LATMM+P VTMIP F+L K Sbjct: 80 NSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQ 139 Query: 148 IGWIDSWMPLIIPGMFGAAAAVFLLRQFFLTIPRELEDAAKVDGMNPFHTFLRIMLPLSK 207 GW+DS+ LI+P +F + FLLRQ F+ IP+ELE+AA +DG N F F +++LPL+K Sbjct: 140 FGWLDSYAGLIVPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAK 198 Query: 208 PALITQGLLNFIAGYNDYLGPLIYINSPEKYTLQLVLASFQGFYTSQWTYIMAGSVLALI 267 P T G+L F+ +N YL PLI +S E TL L L+ QG Y + + +MAG ++++I Sbjct: 199 PTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVI 258 Query: 268 PTLLVFFFAQKYFVEGIALTGMK 290 P L V+ FAQKYF++G+A++GMK Sbjct: 259 PILAVYLFAQKYFIQGMAMSGMK 281 >all0261 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 175 bits (443), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 151/269 (56%), Gaps = 2/269 (0%) Query: 24 KGFAYLFLSAGALVMAVPFLWMLSTSLKQQGMEFEMPPKWIPQHFEWSNYHFVLFESDI- 82 K Y+ L+ A++ VPFLW LS S K P ++PQ+F NY + + + Sbjct: 9 KVLLYVLLTTYAVITLVPFLWALSASFKPLSEIVSGTPNFLPQNFTLDNYRQIFLQEPLF 68 Query: 83 VQGFVNTXXXXXXPCLVGXXXXXXXXXXXXXXXXXXRNLLFGLLLATMMIPGVVTMIPTF 142 ++ N+ L+ +N F L+LA + +P +T+IPTF Sbjct: 69 LRWLFNSVVIAVSVTLLNLLFNSMAGYALARLSFVGKNFWFFLILAVLAVPAQITLIPTF 128 Query: 143 MLFKNIGWIDSWMPLIIPGMFGAAAAVFLLRQFFLTIPRELEDAAKVDGMNPFHTFLRIM 202 ++ K IGW++S+ +I+P M A +F++RQFF+ P+ELE+AA++DG+N F I+ Sbjct: 129 LILKAIGWLNSYQGMIVPSMVNATF-IFMMRQFFINFPQELEEAAQLDGLNTIGIFRYII 187 Query: 203 LPLSKPALITQGLLNFIAGYNDYLGPLIYINSPEKYTLQLVLASFQGFYTSQWTYIMAGS 262 LPL+KPAL Q + F+ +N++L P++ + PE +TL L L +F+G Y S W YIMA S Sbjct: 188 LPLAKPALAAQAVFVFMGSWNNFLLPVVILFEPEMFTLPLGLNTFKGQYISYWNYIMAAS 247 Query: 263 VLALIPTLLVFFFAQKYFVEGIALTGMKG 291 ++ +P L ++ F +YF++ TG KG Sbjct: 248 MVFTLPALSIYAFFNRYFIQSATFTGGKG 276 >MT2099 [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 144/251 (57%), Gaps = 2/251 (0%) Query: 41 PFLWMLSTSLKQQGMEFEMPPKWIPQHFEWSNYHFVLFESDIVQGFVNTXXXXXXPCLVG 100 P +W LS SLK G E P P H +WSNY V + F NT Sbjct: 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 101 XXXXXXXXXXXXXXXXXXRNLLFGLLLATMMIPGVVTMIPTFMLFKNIGWIDSWMPLIIP 160 R+ LF L L+T+M+P VT+IP F+L + +GW+D+ +I+P Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQFILMRIVGWVDTPWAMIVP 149 Query: 161 GMFGAAAAVFLLRQFFLTIPRELEDAAKVDGMNPFHTFLRIMLPLSKPALITQGLLNFIA 220 G+FG+A +L+RQFF T+P +LE+AA +DG +P+ + RI+LP S+PA++ G+L ++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 221 GYNDYLGPLIYINSPEKYTLQLVLASFQGFYTSQWTYIMAGSVLALIPTLLVFFFAQKYF 280 +ND+L PL+ I TL L L +G Y ++W +MA S+L L+P ++++ AQ+ F Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 281 VEGIALTGMKG 291 V GIA+TG+ G Sbjct: 270 VRGIAVTGLGG 280 >Rv2039c [G] COG0395 ABC-type sugar transport system, permease component Length = 280 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 143/251 (56%), Gaps = 2/251 (0%) Query: 41 PFLWMLSTSLKQQGMEFEMPPKWIPQHFEWSNYHFVLFESDIVQGFVNTXXXXXXPCLVG 100 P +W LS SLK G E P P H +WSNY V + F NT Sbjct: 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89 Query: 101 XXXXXXXXXXXXXXXXXXRNLLFGLLLATMMIPGVVTMIPTFMLFKNIGWIDSWMPLIIP 160 R+ LF L L+T+M+P VT+IP +L + +GW+D+ +I+P Sbjct: 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149 Query: 161 GMFGAAAAVFLLRQFFLTIPRELEDAAKVDGMNPFHTFLRIMLPLSKPALITQGLLNFIA 220 G+FG+A +L+RQFF T+P +LE+AA +DG +P+ + RI+LP S+PA++ G+L ++ Sbjct: 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209 Query: 221 GYNDYLGPLIYINSPEKYTLQLVLASFQGFYTSQWTYIMAGSVLALIPTLLVFFFAQKYF 280 +ND+L PL+ I TL L L +G Y ++W +MA S+L L+P ++++ AQ+ F Sbjct: 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269 Query: 281 VEGIALTGMKG 291 V GIA+TG+ G Sbjct: 270 VRGIAVTGLGG 280 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 148/270 (54%), Gaps = 15/270 (5%) Query: 35 ALVMAVPFLWMLSTSLKQQGMEFEMPPKWIPQHFEWSNYHFVLFESDIVQGFVNTXXXXX 94 +LV P +W +STS K IP+ F W NY V + + VN+ Sbjct: 23 SLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLILAV 82 Query: 95 XPCLVGXXXXXXXXXXXXXXXXXXRNLLFGLLLATMMIPGVVTMIPTFMLFKN------- 147 L + LF L +MMIP VVTMIP+F++ KN Sbjct: 83 GGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGN 142 Query: 148 -------IGWIDSWMPLIIPGMFGAAAAVFLLRQFFLTIPRELEDAAKVDGMNPFHTFLR 200 +G+I+++ ++IPG GA + +F ++QFF T+P EL +AA++DG + F F + Sbjct: 143 DITGHGGMGFINTYWAILIPGAAGAFS-IFFMKQFFETLPDELSEAARIDGCSEFKIFWK 201 Query: 201 IMLPLSKPALITQGLLNFIAGYNDYLGPLIYINSPEKYTLQLVLASFQGFYTSQWTYIMA 260 I +PL+K AL T G++ F AG+N ++ PLI +NS + T+Q+ LASFQ ++ + +MA Sbjct: 202 IYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQYNESANYGALMA 261 Query: 261 GSVLALIPTLLVFFFAQKYFVEGIALTGMK 290 G++++ IP L VF FAQKYFVEGIA G K Sbjct: 262 GTIVSTIPVLFVFIFAQKYFVEGIAHNGGK 291 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,067,578 Number of extensions: 685504 Number of successful extensions: 2579 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 2359 Number of HSP's successfully gapped: 153 Length of query: 291 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 186 Effective length of database: 26,268,361 Effective search space: 4885915146 Effective search space used: 4885915146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)