BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0031.p (435 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 108 2e-23 BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic... 103 6e-22 PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 86 1e-16 PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic ... 84 5e-16 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 79 1e-14 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 19/314 (6%) Query: 49 TVKIFQFKTEIVEGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS 108 T++ F K E+ + L E+ +FEKE+P IK+ + V + G LKT+ +GD PD+ + Sbjct: 35 TIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNV---PNAGEVLKTRVLAGDVPDVVN 91 Query: 109 NGGYA-EMALWADK--LEDLSDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKD 165 + E+ WA EDLS++ ++K + AE + K Y +P G YNKD Sbjct: 92 IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKD 151 Query: 166 LFAKAGITETPKTITELEAAAKKLQAINVTPFGNAYQEWWLLG--NQ-GISVAFAQQDNV 222 F + G+ + P+T E E K + A TPFG A + W L NQ + A Sbjct: 152 KFEELGL-KVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEA 210 Query: 223 DEFIKGLNAGTASIVGNPVFKDWSNLLNLTVKYG--QKNPLTTDANTHLALFAKGETAMM 280 +++++ + A + +P+ KD ++++ G QKN + FA+G+ M Sbjct: 211 NQYLR-YSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMT 269 Query: 281 QEGNWAQTLVDNITPNMNIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSASKE--EAKT 338 G+WA T ++ PN IG F +P EK LTVG +L + + +K EA Sbjct: 270 PNGSWAITAINEQKPNFKIGTFMIP---GKEKGQSLTVG-AGDLAWSISATTKHPKEANA 325 Query: 339 FLNWLVTSDMGKEY 352 F+ ++ ++ ++Y Sbjct: 326 FVEYMTRPEVMQKY 339 >BS_yurO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 422 Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 21/335 (6%) Query: 63 LNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFSN--GGYAEMALWAD 120 E+ EFEK+HP+I + I+ V + Y +K + PDI+ + +A + + Sbjct: 49 FEEVVKEFEKDHPDIDIQIEAVLNDS-YKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGN 107 Query: 121 KLEDLS-----DQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKDLFAKAGITET 175 K DLS D W L+ P T + K YG+P ++ + YNKD+F K + + Sbjct: 108 KALDLSSYYKNDTDWSSQLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNL-DP 166 Query: 176 PKTITELEAAAKKLQAINVTPFGNAYQEWWLLGNQGISVAFAQQDNVDEFI--KGLNAGT 233 PKT EL +KKL+ TP + W + + + Q VDE K NA T Sbjct: 167 PKTWDELIDVSKKLKEHGYTPISFGTKATWTISHY---IGTLNQRMVDEKTREKDYNAKT 223 Query: 234 ASIVGNPVFKDWSNLLNLTVKYGQKNPLTTDANTHLALFAKGETAMMQEGNWAQTLVDNI 293 K L L + Y K+ + D F G++AM+ +A+T + Sbjct: 224 GEFTDEGYVKALEKLQEL-MPYFNKHVNSVDHEYVRQQFKSGKSAMI----YAETAEIKL 278 Query: 294 TPNMNIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSASKEEAKTFLNWLVTSDMGKEYI 353 +N+GMFP P + + + G P +++ + +EA FL +L + MG++ + Sbjct: 279 VEPVNLGMFPFPEISGQKGSSEALTGAPEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLV 338 Query: 354 TKKWKFIPALKTIEATPEDIGALGSDVWKYVQDGK 388 K+ T AT E+ A+ + +++ D K Sbjct: 339 KDVGKYSAVQGT--ATEENATAIQREAVQHIVDAK 371 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/324 (26%), Positives = 144/324 (44%), Gaps = 36/324 (11%) Query: 70 FEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFS-NGGYAEMALWADKL---EDL 125 FEKE+PNIK+ + + + + F +G APD+F + +A + + L +L Sbjct: 92 FEKENPNIKVKYEVIT--QMFHENILASFGAGVAPDVFYVDSSWAPIFIEKGALYPISEL 149 Query: 126 SDQPWVKDLIPMAAEPMTKDGKTYGMPMNLEGIGYVYNKDLFAKAGITETPKTITELEAA 185 +D+ ++ P EP K+GK YG+P + + YNK LF +AG+T+ P+T EL Sbjct: 150 ADESFINKFYPFLLEPFKKNGKLYGLPKDWSMLALFYNKKLFEQAGLTKPPETWDELLEY 209 Query: 186 AKKLQAINVTPFGNAYQEWWLLG--NQGISVAFAQQDNVDEFIKGLNAGTASIVGNPVFK 243 AK + P Y LG N+ + VA + F K + AS NPV + Sbjct: 210 AKIITEKTGKPGLAIY-----LGGFNRYVPVAVSNGAPKPWFEKPED---ASWFDNPVVR 261 Query: 244 D----WSNLLNLTVKYGQKN--------PLTTDANTHLALFAKGETAMMQEGNWAQTLVD 291 + + NL +K P A F + + AM+ GNW + Sbjct: 262 ETLTWYINLYRKGKVEREKKGLPPYVVAPEDVGAGWLGDAFGQQKVAMVISGNWMIPFLA 321 Query: 292 NITPNMNIG----MFPMPINDNAEKNDKLTVGIPANLVVNKDSASKEEAKTFLNWLVTSD 347 + PN G + P+P A KN ++T+ L +N + +EA F+ +++ Sbjct: 322 DQFPNFKYGEDWDIAPLP----AGKNGRVTMVYTVILGINSKTKHPKEAWKFVEFILGPR 377 Query: 348 MGKEYITKKWKFIPALKTIEATPE 371 KE + K + +P++K E P+ Sbjct: 378 GQKELVVKAGQTLPSMKGFENDPD 401 >PH1214 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 441 Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 115/257 (44%), Gaps = 16/257 (6%) Query: 61 EGLNELKVEFEKEHPNIKLDIQTV--GGGADYGAALKTKFASGDAPDIFSNGGYAEMALW 118 E + L +FEK++PNIK+ V GGG + L++ +G PD F EMA + Sbjct: 57 EAFDALAKKFEKKYPNIKIKANPVSGGGGVNLKMVLQSLMLAGKPPDTFQVHAGYEMARY 116 Query: 119 --ADKLEDLSDQPWVKDL---IPMAAEPMTK-DGKTYGMPMNLEGIGYV-YNKDLFAKAG 171 A++L + D W +D+ P + M + Y +P+N+ + YNK +F K G Sbjct: 117 IKANQLTPIDDI-WTEDMKKNYPKVIQQMVIFNNHYYAVPINVHRANVIWYNKQIFKKYG 175 Query: 172 ITETP-KTITELEAAAKKLQAINVTPFGNAYQEWWLLGNQGISVAFAQQDNVDEFIKGLN 230 I + KTI +L A A+KL+ VTPF + W Q V VD + K +N Sbjct: 176 IDPSSIKTIDDLFAVAEKLKENGVTPFALGDRNKW-PATQVFEVMLVAVGGVDYYEKFIN 234 Query: 231 AGTASIVGNPVFKDWSNLLNLTVKYGQKNPLTTDANTHLALFAKGETAMMQEGNWAQTL- 289 ++ +P K V+Y + + AL KGE AM G+WA Sbjct: 235 GEISA--NDPTLKKVLEYFVKYVEYSNPDHAAKTWDEACALVYKGEAAMTLMGDWANGYF 292 Query: 290 -VDNITPNMNIGMFPMP 305 PN++ G P+P Sbjct: 293 KAKGWKPNVDYGAIPIP 309 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 147/335 (43%), Gaps = 44/335 (13%) Query: 61 EGLNELKVEFEKEHPNIKLDIQTVGGGADYGAALKTKFASGDAPDIFSNG-----GYAEM 115 + L+++ EFEK++P+IK+++QT+ DY L+T+ A GDAPD F YAE Sbjct: 45 KALDKMVKEFEKQNPDIKVNVQTIAFN-DYFTKLQTQIAGGDAPDAFELNYETFMQYAEK 103 Query: 116 ALWADKLEDLSDQPWVKDLIP-----MAAEPMTKDGKTYGMPMNLEGIGYVYNKDLFAKA 170 + AD + KD P A + DGK YGM + + +YNKDLF KA Sbjct: 104 GVLADLTSYIEKD---KDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA 160 Query: 171 GITETPK---TITELEAAAKKLQAINVTPFGNAYQEWWLLGNQGISVAFAQQDNVDEFIK 227 G+ E P T + EAAAKKL +G + + N+ V A Q+ F K Sbjct: 161 GV-EYPTADWTWKDEEAAAKKLTDAKNKVWGTSQP---VTMNEFFKV--AAQNGGSIFDK 214 Query: 228 GLNAGTASIVGNPVFKDWSNLLNLTVKYGQKNPLTTDANTHLA--LFAKGETAMMQEGNW 285 + T + + +P + L V + P +D + L LF G+ AM+ G W Sbjct: 215 DM---TKTTINSPENVEALTHLTNEVTESKVAPSPSDLSGQLPEDLFMNGQIAMLHTGIW 271 Query: 286 AQTLVDNITPNMNIGMFPMPINDNAEKNDKLTVGIPANLVVNKDSASKEEAKTFLNWL-V 344 + + F + A K T + V+KDS KE A F +++ Sbjct: 272 LFDMFQD-------APFKWDVQVEAGNKQKATHFFANGIGVSKDSDKKEAAFKFASFMSA 324 Query: 345 TSDMGKEYITKKWKFIPALKT-------IEATPED 372 + K I W+ +PA + ++ATP D Sbjct: 325 NKEAAKIRIANNWE-LPATENKEILQPYLDATPPD 358 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,482,614 Number of extensions: 1362297 Number of successful extensions: 3460 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 3459 Number of HSP's successfully gapped: 32 Length of query: 435 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 326 Effective length of database: 25,807,025 Effective search space: 8413090150 Effective search space used: 8413090150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)