BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0030.p (277 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2406 [G] COG0395 ABC-type sugar transport system, permease co... 188 7e-48 SP1895 [G] COG0395 ABC-type sugar transport system, permease com... 160 1e-39 BS_amyC [G] COG0395 ABC-type sugar transport system, permease co... 156 3e-38 BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 149 5e-36 BS_yurM [G] COG0395 ABC-type sugar transport system, permease co... 144 1e-34 >Cgl2406 [G] COG0395 ABC-type sugar transport system, permease component Length = 304 Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 159/281 (56%), Gaps = 6/281 (2%) Query: 2 KAKSKGRLNIGIEVLMILLALLFLSPFYFLLANSVKSFGEILSNAASWPQEFMWSNYTN- 60 K G + ++ ++FL P F+ NS KS I S+ S P W + N Sbjct: 25 KTHMSGSAKFVVYAILAFFTIVFLGPILFIFINSFKSKFAISSDPFSLPIGETWVGFENF 84 Query: 61 --AWKLARFSEAFRNXXXXXXXXXXXXXXFSAMAAYRMVRANTRFNQILLLLFVAAMVVP 118 F EA FSAM AY + R T + +L LFV +M++P Sbjct: 85 MVGLTKQGFLEATLWSFIITILSVIVIVFFSAMTAYYITRVKTWWTNLLYYLFVVSMIIP 144 Query: 119 FQTIMIPILKVVNILGVNNSFAGLIISNLGLSIPMAIFLFHGFIKSVPLEIEEAATVDGC 178 FQ +M P +K+ ++L +NN G+++ LG +++F+F GF+KS+PL++EEAA +DGC Sbjct: 145 FQMVMFPTVKIADMLHLNNPI-GIVVLYLGFGSGLSVFMFAGFVKSIPLDVEEAAMIDGC 203 Query: 179 NPISAFFRIVLPLLKPMLMTIIVLNALGIWNDYLLPSLILQ-APGLRTIPLATFSFFGQY 237 P+ +FR+V P+LKP +T+ +LNA+ +WNDYLLP L++ + +TIP+ SF G Sbjct: 204 GPLQNYFRVVWPMLKPTAITVAILNAMWVWNDYLLPYLVIGLSTRYKTIPVVIQSFVGSN 263 Query: 238 TKQWDMALPA-LTLGVAPIVIFYLFMQRYIVEGIAAGSVKG 277 + A+ A L L + PIVIFY QR+I+EG+AAG+VKG Sbjct: 264 GNRDTGAMMAMLVLAIIPIVIFYFSTQRHIIEGVAAGAVKG 304 >SP1895 [G] COG0395 ABC-type sugar transport system, permease component Length = 278 Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/281 (35%), Positives = 159/281 (56%), Gaps = 9/281 (3%) Query: 1 MKAKSKGRLNIGIEVLMILLALLFLSPFYFLLANSVKSFGEILSNAASWPQEFMWSNYTN 60 MK + L IG +L+IL ++L L P L +S K +I+ N +P F W N++ Sbjct: 2 MKQDERKAL-IGKYILLILGSVLILVPLLATLFSSFKPTKDIVDNFFGFPTNFTWDNFSR 60 Query: 61 AWKLAR-FSEAFRNXXXXXXXXXXXXXXFSAMAAYRMVRANTRFN--QILLLLFVAAMVV 117 LA + N F MAAY + R ++ I+ L + + V Sbjct: 61 L--LADGIGGYYWNSVVITVLSLLAVMIFIPMAAYSIARNMSKRKAFTIMYTLLILGIFV 118 Query: 118 PFQTIMIPILKVVNILGVNNSFAGLIISNLGLSIPMAIFLFHGFIK-SVPLEIEEAATVD 176 PFQ IMIPI +++ LG+ N+F GLI+ L +IP +FL+ G+IK S+P ++EAA +D Sbjct: 119 PFQVIMIPITVMMSKLGLANTF-GLILLYLTYAIPQTLFLYVGYIKISIPESLDEAAEID 177 Query: 177 GCNPISAFFRIVLPLLKPMLMTIIVLNALGIWNDYLLPSLIL-QAPGLRTIPLATFSFFG 235 G N + +FRI+ P++KPM T +++NAL WND++LP L+L + + T+PL +++ G Sbjct: 178 GANQFTTYFRIIFPMMKPMHATTMIINALWFWNDFMLPLLVLNRDSKMWTLPLFQYNYAG 237 Query: 236 QYTKQWDMALPALTLGVAPIVIFYLFMQRYIVEGIAAGSVK 276 QY + + + +G+ I I YLF QR+I+ G++ G+VK Sbjct: 238 QYFNDYGPSFASYVVGIISITIVYLFFQRHIISGMSNGAVK 278 >BS_amyC [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 153/278 (55%), Gaps = 3/278 (1%) Query: 1 MKAKSKGRLNIGIEVLMILLALLFLSPFYFLLANSVKSFGEILSNAASWPQEFMWSNYTN 60 M+A + I I +L ++A PFY LL S+K+ G+ S+ +P + + N++ Sbjct: 1 MRAARTKSMRI-ITLLAAIVACAHFIPFYILLTTSLKAKGD-YSSKWIFPADISFHNFSE 58 Query: 61 AWKLARFSEAFRNXXXXXXXXXXXXXXFSAMAAYRMVRANTRFNQILLLLFVAAMVVPFQ 120 AW+ A +F N F ++AAY + R T+ N+ + L ++ M++P Sbjct: 59 AWERASLGNSFINTMIITGFSALLLIIFGSLAAYPLARRETKLNKAVFALLISIMIIPPL 118 Query: 121 TIMIPILKVVNILGVNNSFAGLIISNLGLSIPMAIFLFHGFIKS-VPLEIEEAATVDGCN 179 T M+P+ ++V G+ N+ A I N +P+ +FL+ GFI+S +P E+ EAA +DG Sbjct: 119 TSMVPLYRMVVDAGMVNTHAIAIFINTAAYMPLTVFLYSGFIRSTIPKELVEAARIDGAG 178 Query: 180 PISAFFRIVLPLLKPMLMTIIVLNALGIWNDYLLPSLILQAPGLRTIPLATFSFFGQYTK 239 + FF IV PLLKP+ TI +++ + IWNDY LQ ++T+ +A FFG+ Sbjct: 179 MLKIFFTIVFPLLKPITATICIISCVFIWNDYQFAIFFLQDQKVQTLTVAMAGFFGENAN 238 Query: 240 QWDMALPALTLGVAPIVIFYLFMQRYIVEGIAAGSVKG 277 + A + + P+V+ +L +Q+Y + G+++G+VKG Sbjct: 239 NLHLVAAAALMAMLPMVVLFLALQKYFIAGLSSGAVKG 276 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 143/281 (50%), Gaps = 5/281 (1%) Query: 1 MKAKSKGRLNIGIEVLMILLALLFLSPFYFLLANSVKSFGEILSNAASW-PQEFMWSNYT 59 MK K ++ +I + + P +++A+S+K EI S A+S P EF+WSNY Sbjct: 1 MKTKRTWYADVIYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYP 60 Query: 60 NAWK---LARFSEAFRNXXXXXXXXXXXXXXFSAMAAYRMVRANTRFNQILLLLFVAAMV 116 + W F F+N S++ AY R +F ++L +A ++ Sbjct: 61 DGWAGFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVM 120 Query: 117 VPFQTIMIPILKVVNILGVNNSFAGLIISNLGLSIPMAIFLFHGFIKSVPLEIEEAATVD 176 +P Q +IP + + LG N+F LI+ P IFL FI+ +P E++EAA +D Sbjct: 121 LPVQITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAIID 180 Query: 177 GCNPISAFFRIVLPLLKPMLMTIIVLNALGIWNDYLLPSLILQAPGLRTIPLATFSFF-G 235 GC+ F+R++LPLLKP L+T+ + + W+D+L P + L ++T+ L +F Sbjct: 181 GCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDA 240 Query: 236 QYTKQWDMALPALTLGVAPIVIFYLFMQRYIVEGIAAGSVK 276 + W L TL + P I +LF QRY+VEGI+ +K Sbjct: 241 ESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVEGISTTGLK 281 >BS_yurM [G] COG0395 ABC-type sugar transport system, permease component Length = 300 Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/280 (30%), Positives = 139/280 (49%), Gaps = 4/280 (1%) Query: 1 MKAKSKGRLNIGIEVLMILLALLFLS---PFYFLLANSVKSFGEILSNAASWPQEFMWSN 57 +K K + + IG + + L L ++ P +++ ++ K+ +I ++ S P + N Sbjct: 22 VKDKPRRKWYIGETSVWVFLFLYLIAIAYPLLWMVMSAFKNSDDIFEHSWSLPSSWHPEN 81 Query: 58 YTNAWKLARFSEAFRNXXXXXXXXXXXXXXFSAMAAYRMVRANTRFNQILLLLFVAAMVV 117 + +AW S F N SA AAY + R + L+L + +++ Sbjct: 82 FVSAWNQG-ISSYFMNSVIVTALTCVITVFISAWAAYGLSRFEFKGKGFFLVLCLGGLML 140 Query: 118 PFQTIMIPILKVVNILGVNNSFAGLIISNLGLSIPMAIFLFHGFIKSVPLEIEEAATVDG 177 Q ++P+ ++ LG+ N++ LI+ IP I L + S+ E+EEAA +DG Sbjct: 141 TPQVSLVPLYSIIQSLGLYNTYWALILPYAAYRIPFTIILIRSYFLSISKELEEAAYLDG 200 Query: 178 CNPISAFFRIVLPLLKPMLMTIIVLNALGIWNDYLLPSLILQAPGLRTIPLATFSFFGQY 237 C FFRI LP+ P+L+T +L A WN+++ + + LRTIP F Sbjct: 201 CTSFGVFFRIFLPMSVPILVTSGILTAYHTWNEFMFAIIFIDDENLRTIPAGLMQFRDAL 260 Query: 238 TKQWDMALPALTLGVAPIVIFYLFMQRYIVEGIAAGSVKG 277 W + L LT+ API+I +L MQ+Y V GIA+GSVKG Sbjct: 261 QTDWGVLLAGLTISAAPIIILFLLMQKYFVRGIASGSVKG 300 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,612,794 Number of extensions: 658827 Number of successful extensions: 2863 Number of sequences better than 1.0e-05: 185 Number of HSP's gapped: 2682 Number of HSP's successfully gapped: 185 Length of query: 277 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 172 Effective length of database: 26,268,361 Effective search space: 4518158092 Effective search space used: 4518158092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)