BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0029.p (273 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease c... 207 1e-53 MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease... 199 3e-51 SP1896 [G] COG1175 ABC-type sugar transport systems, permease co... 167 2e-41 BS_amyD [G] COG1175 ABC-type sugar transport systems, permease c... 147 2e-35 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 139 6e-33 >Cgl2407 [G] COG1175 ABC-type sugar transport systems, permease components Length = 281 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 117/277 (42%), Positives = 175/277 (63%), Gaps = 17/277 (6%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 L F + ++PF++G + SFT + ++ N WVG DN+ F+ F S+F FTV ++ Sbjct: 18 LAFMIAFLVPFIVGFFLSFTKFTTIT-NAKWVGIDNYVKAFSQREGFISAFGFTVLVVIV 76 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIF---IKGFATMG 117 V+ NI F LA+ LT+ L+ N RT+FFMPN+IGG++LG+ WQ + + +AT Sbjct: 77 SVITVNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVLSHYATTI 136 Query: 118 DITGWSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGAS 177 W F G+ ++M+ WQ GY+M+IYIA L NV E++EAAE+DG + Sbjct: 137 S-ADWKF-----------GYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAELDGVN 184 Query: 178 RMQVLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFL 237 + ++LR + +P++MP++TI LFL +S SFK+FD NL+LT G P TE VA+NI N F Sbjct: 185 KWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIINTLFN 244 Query: 238 N-NRYGLGTAKALLFFLIVAIITVIQVRVTKSKEVEA 273 N G+G AKA++F ++V +I Q+R T+SKE+EA Sbjct: 245 RMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA 281 >MYPU_1010 [G] COG1175 ABC-type sugar transport systems, permease components Length = 283 Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/268 (42%), Positives = 166/268 (61%), Gaps = 15/268 (5%) Query: 10 PFLMGMYYSFTDW--NGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVLGVVLTNI 67 P ++G SFTDW + W+G +N+K T DP F S W+T FT+L ++LTN Sbjct: 25 PIILGFLLSFTDWFKEQLIFEGKWIGFNNYKIAIT-DPRFIHSIWYTSVFTLLSLILTNS 83 Query: 68 VGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDITGWSFFNL 127 GF AY L+K + N+ R +FF+PN+IGGL+LG++WQ IF +++ F + Sbjct: 84 FGFGFAYALSKKIAGTNIFRGVFFLPNMIGGLILGYLWQLIFDNALSSI-------FSHS 136 Query: 128 PWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQVLRSIIV 187 G+ A+ MV+ WQ +GY+MVIYIA+L NV+K + E+A+I+G + S+I+ Sbjct: 137 LRFGNKWEAMLAMSMVYTWQMAGYIMVIYIAALQNVNKSLSESAKIEGCGVFKHFFSVIL 196 Query: 188 PLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFL---NNRYGLG 244 P IMPA+TI LFL +S SF+MFD NL+LTKG T +A NIY AF+ +G+ Sbjct: 197 PSIMPAITIVLFLLVSRSFQMFDQNLALTKGD--GQTGLIAYNIYASAFVSAYQESFGIA 254 Query: 245 TAKALLFFLIVAIITVIQVRVTKSKEVE 272 AK+ +F +IVA I+V QV +TK EV+ Sbjct: 255 QAKSFIFVVIVAAISVTQVYITKKFEVQ 282 >SP1896 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/263 (34%), Positives = 149/263 (56%), Gaps = 1/263 (0%) Query: 9 IPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVLGVVLTNIV 68 +P G +YSFT+W G++ N +VG +NFK +F DP F ++ FT + VV + Sbjct: 35 VPMFQGAFYSFTNWTGLTYNYKFVGLNNFKLLFM-DPKFMNAIGFTAIIAIAMVVGEIAL 93 Query: 69 GFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDITGWSFFNLP 128 G F+A L +K + R FF P V+ GL + I++ +F G +G+ FF Sbjct: 94 GIFIARVLNSKIKGQTFFRAWFFFPAVLSGLTVALIFKQVFNYGLPAIGNALHIEFFQTS 153 Query: 129 WLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQVLRSIIVP 188 LG +A V V +WQ ++I++A L ++ E+ EAA IDGA+ QV +I +P Sbjct: 154 LLGTKWGAIFAAVFVLLWQGVAMPIIIFLAGLQSIPTEITEAARIDGATSKQVFWNIELP 213 Query: 189 LIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNRYGLGTAKA 248 ++P+V++ LA+ FD ++T GGP +T S+ + +YN AF NN++G A A Sbjct: 214 YLLPSVSMVFILALKGGLTAFDQVFAMTGGGPNNATTSLGLLVYNYAFKNNQFGYANAIA 273 Query: 249 LLFFLIVAIITVIQVRVTKSKEV 271 ++ F ++ +I++IQ+RV+K E+ Sbjct: 274 VILFFLIVVISIIQLRVSKKFEI 296 >BS_amyD [G] COG1175 ABC-type sugar transport systems, permease components Length = 303 Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 145/266 (54%), Gaps = 2/266 (0%) Query: 8 IIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVLGVVLTNI 67 I PF+ G +FT+WNG S WVG ++ +F+ DPD W T+ + + N+ Sbjct: 37 IYPFVKGTLITFTNWNGFSQVYQWVGFAQYERLFS-DPDTWHILKNTLHYGLGSTFFQNV 95 Query: 68 VGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDITG-WSFFN 126 VG A L + +KT+ + RTI ++P +I L++G+IW F F + D+ G + Sbjct: 96 VGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALNDLLGVFGISP 155 Query: 127 LPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRMQVLRSII 186 + L + W IVM+ +Q G MV+Y+A L ++ K+ EAA++DGA + Q +I Sbjct: 156 INALASPSLNPWIIVMINTYQYVGIAMVVYLAGLQSIPKDYYEAAQMDGAKQGQQFFTIT 215 Query: 187 VPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNNRYGLGTA 246 +PL+MP++TI + + I K+FD+ ++LT GGP +++S++ +Y+ F G Sbjct: 216 LPLLMPSITINIVINIIGGLKLFDVIIALTAGGPGNASQSMSTFMYDLYFKRQDAGYAAT 275 Query: 247 KALLFFLIVAIITVIQVRVTKSKEVE 272 + + ++ II+ + K KE E Sbjct: 276 QGIFMAFVILIISFCALAYFKRKETE 301 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 16/270 (5%), Positives = 45/270 (16%), Gaps = 2/270 (0%) Query: 1 LFFTLITIIPFLMGMYYSFTDWNGVSGNVSWVGADNFKAIFTNDPDFWSSFWFTVRFTVL 60 + + S + + + Sbjct: 50 CAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARS-YGSYEDLLADPEIDA 108 Query: 61 GVVLTNIVGFFLAYFLTKPLKTRNMLRTIFFMPNVIGGLLLGFIWQFIFIKGFATMGDIT 120 + + L A M Sbjct: 109 IYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRHH 168 Query: 121 G-WSFFNLPWLGDATTGFWAIVMVFVWQSSGYLMVIYIASLSNVSKEVLEAAEIDGASRM 179 W + AI +F + V + + I+ A + Sbjct: 169 PQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFL 228 Query: 180 QVLRSIIVPLIMPAVTIGLFLAISWSFKMFDLNLSLTKGGPFKSTESVAMNIYNEAFLNN 239 + +M + ++ F L + + + + + Sbjct: 229 FDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLE 288 Query: 240 RYGLGTAKALLFFLIVAIITVIQVRVTKSK 269 A A +++ + + Sbjct: 289 IPIPFNAPADEPTVLIFDDGRDLAGGGREE 318 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.143 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,222,279 Number of extensions: 749198 Number of successful extensions: 3387 Number of sequences better than 1.0e-05: 202 Number of HSP's gapped: 3169 Number of HSP's successfully gapped: 203 Length of query: 273 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 168 Effective length of database: 26,268,361 Effective search space: 4413084648 Effective search space used: 4413084648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)