BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0013.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH1017 [R] COG0535 Predicted Fe-S oxidoreductases 56 9e-08 TM0825 [R] COG0535 Predicted Fe-S oxidoreductases 54 3e-07 STM0825 [T] COG1734 DnaK suppressor protein 54 3e-07 AF1615 [R] COG0535 Predicted Fe-S oxidoreductases 53 6e-07 PA0511 [R] COG0535 Predicted Fe-S oxidoreductases 51 2e-06 >PH1017 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 9/141 (6%), Positives = 24/141 (17%), Gaps = 16/141 (11%) Query: 4 FKKVYIEITSVCNLACSFC--PPTERQKNFMKLDTFNTILDEIK--PHSNHIYLHVKGEP 59 + + A + + + + ++ + Sbjct: 18 LGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHG 77 Query: 60 LLHPKLGELLDGXXXXAHAKGFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSFD--- 116 + ++ I + L K + L R L + Sbjct: 78 SREKLIIASK----VSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHW 133 Query: 117 -----GHAGSENREGYVSEII 132 G S Sbjct: 134 PQRPTNCFGKLGYSWTDSAPA 154 >TM0825 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 12/284 (4%), Positives = 34/284 (11%), Gaps = 49/284 (17%) Query: 7 VYIEITSVCNLACS--FCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPLLHPK 64 S L +E + ++ I + L Sbjct: 8 HSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTET 67 Query: 65 LGELLDGXXXXAHAKGFRVNITTNGTL--------IHKAGPKLLGKPALRQMNFSLHSFD 116 H ++ I + + I + Sbjct: 68 YVGNW----LAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 117 GHAGSENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLAL----- 171 + + + +L + Sbjct: 124 DYLDLYQVH--WPQRPTNCFG--------KLGYSWTDSAPAVSLLDTLDALAEYQRAGKI 173 Query: 172 -------------LEEAFNLDFNIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDG 218 + D + ++V Sbjct: 174 RYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEG-----V 228 Query: 219 KGFCHALRSQAAVLVDGTVVPCC-LDGEGVINLGNLHEKPFSEI 261 + L + + Sbjct: 229 EL-LAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQ 271 >STM0825 [T] COG1734 DnaK suppressor protein Length = 217 Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 0/284 (0%), Positives = 0/284 (0%), Gaps = 49/284 (17%) Query: 7 VYIEITSVCNLACS--FCPPTERQKNFMKLDTFNTILDEIKPHSNHIYLHVKGEPLLHPK 64 ++I V + E+ + + + + + + L + + Sbjct: 8 KSMKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWN 67 Query: 65 LGELLDGXXXXAHAKGFRVNITTNGTL--------IHKAGPKLLGKPALRQMNFSLHSFD 116 + K V L + + + + Sbjct: 68 GPVEI----DQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYF 123 Query: 117 GHAGSENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNLEKQRNRETLAL----- 171 S E +I + + + + + L L Sbjct: 124 QKLVSNIDE--RMALIVDPML--------ATGGSVIATIDLLKKAGCSSIKVLVLVAAPE 173 Query: 172 -------------LEEAFNLDFNIEEKVVPGSGVKIAPRVYLNQDHEFRWPALSEPEDDG 218 Sbjct: 174 GIAALEKAHPDVE----- 228 Query: 219 KGFCHALRSQAAVLVDGTVVPCC-LDGEGVINLGNLHEKPFSEI 261 Sbjct: 229 - 271 >AF1615 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 3/92 (3%), Positives = 14/92 (15%), Gaps = 16/92 (17%) Query: 7 VYIEITSVCNLACSFCPPT----ERQKNFMKLDTFNTILDEIKPHSNHIYLHVKG--EPL 60 + + + + I + ++ Sbjct: 7 PHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI-----NLIDVAEMYPVPPRPET 61 Query: 61 LHPKLGELLDGXXXXAHAKGFRVNITTNGTLI 92 + + AK + + Sbjct: 62 QGLTETYVGN-----WLAKHGSREKLIIASKV 88 >PA0511 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 8/160 (5%), Positives = 18/160 (11%), Gaps = 13/160 (8%) Query: 7 VYIEITSVCNLACSFCPPTERQKNFM-KLDTFNTI--LDEIKPHSNHIYLHVKGEPLLHP 63 + + + + + K Sbjct: 29 EADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKV 88 Query: 64 KLGELLDGXXXXAHAK--GFRVNITTNGTLIHKAGPKLLGKPALRQMNFSLHSF-DGHAG 120 + N K L L G Sbjct: 89 SGPSR------NNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFG 142 Query: 121 SENREGYVSEIISFVREVTAQGVIVSFRLWNLTEDNRTNL 160 S + + + +N Sbjct: 143 KLGYSWTDSAPAVSLLDTLDALAEYQRAG-KIRYIGVSNE 181 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,291,684 Number of extensions: 961315 Number of successful extensions: 1514 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 1532 Number of HSP's successfully gapped: 5 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)