BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0007.p (354 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAB0545 [G] COG3839 ABC-type sugar transport systems, ATPase com... 270 2e-72 AGl1930 [G] COG1879 ABC-type sugar transport system, periplasmic... 270 3e-72 AGl1935 [K] COG2390 Transcriptional regulator, contains sigma fa... 270 3e-72 AGl193 [E] COG3842 ABC-type spermidine/putrescine transport syst... 270 3e-72 AGl1936 [C] COG0667 Predicted oxidoreductases (related to aryl-a... 270 3e-72 >PAB0545 [G] COG3839 ABC-type sugar transport systems, ATPase components Length = 329 Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 125/210 (59%), Positives = 166/210 (79%) Query: 37 PSGCGKTTTLRLIAGFLSAEAGNFMFSGKDYTKVPVEKRNFGFVFQNYALFPHLSVYDNV 96 PSGCGKTTTLR+IAG + GN +F G+D T +P RN GFVFQ+YALFPH++V+ NV Sbjct: 35 PSGCGKTTTLRIIAGLERPDKGNVLFDGRDVTFLPPYSRNIGFVFQDYALFPHMNVFKNV 94 Query: 97 AFGLRLRKLKEAEVQKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLL 156 AFGL +RKL E++++V +LE+V L GFE R+P LSGGQ+QRVA+ARALVIEP++LL Sbjct: 95 AFGLEVRKLPRKEIERKVREVLELVGLKGFENRMPEQLSGGQQQRVALARALVIEPEVLL 154 Query: 157 FDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLD 216 DEPLSNLDA +R ++R+EI+RIQ+ELGITT+YV+HDQEE +ISD++AVMN G+IEQ+ Sbjct: 155 LDEPLSNLDAKVRESLRMEIKRIQKELGITTMYVTHDQEEAMAISDRIAVMNFGRIEQVG 214 Query: 217 QPQAIFKYPASEFVARFIGFGNFISFDGRN 246 +P ++ P +EFVA+F+G GN + N Sbjct: 215 RPLELYYNPKTEFVAKFLGTGNLLKLRSTN 244 >AGl1930 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 348 Score = 270 bits (690), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 0/318 (0%), Positives = 0/318 (0%), Gaps = 9/318 (2%) Query: 37 PSGCGKTTTLRLIAGFLSAEAGNFMFSGKDYTKVPVEKRNFGFVFQNYALFPHLSVYDNV 96 C T + S +F G + Y + ++ ++ Sbjct: 42 KFACEPGETYVMNVMVSSHPYWVPVFEGFKQAAKALGCEAVFTGTPEYDITKQIASFEQE 101 Query: 97 AFGLRLRKLKEAEVQKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLL 156 L + G AA S ++ I V E Sbjct: 102 LVKKPKGILLHPMQADPFIEPINKAIASGVSVTTFAADSPKSKRTAYITSDNVAEAKFAA 161 Query: 157 FDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLD 216 + + + + V + + A + + Sbjct: 162 DEIVKKLGEKGEYAVLENPGQSNHDLRVTALVDYMGRTYPQMKLVGRQATNQDANVAYQA 221 Query: 217 QPQAIFKYPASEFVARFIGFGNFISFDGRNDEGTDIELSRGTLKFLAVKRPNGEGNTGLL 276 + P + + + + + + ++ Sbjct: 222 VGALLQANPNLGALWIPEAGSAEGATTAVLEAKKKVLILHADITPATLEHIKQGNIYMS- 280 Query: 277 GAIRPDDLQLLSSPPESGATGNTLPGTVQVSTYLGRSYQYQVETELG-VFTVNQELEHPF 335 +Q NT G Y+ + N Sbjct: 281 -INPNQGVQG------FMGFMNTFLGAHSDLIDPFNDYKVSGFNPMQVPSMDNGFAVITK 333 Query: 336 GQGEKVTVYFPKEKLVLV 353 Sbjct: 334 351 >AGl1935 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain Length = 134 Score = 270 bits (690), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 0/318 (0%), Positives = 0/318 (0%), Gaps = 9/318 (2%) Query: 37 PSGCGKTTTLRLIAGFLSAEAGNFMFSGKDYTKVPVEKRNFGFVFQNYALFPHLSVYDNV 96 K ++ A A + + + + Sbjct: 42 FQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKG 101 Query: 97 AFGLRLRKLKEAEVQKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLL 156 Sbjct: 102 161 Query: 157 FDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLD 216 Sbjct: 162 221 Query: 217 QPQAIFKYPASEFVARFIGFGNFISFDGRNDEGTDIELSRGTLKFLAVKRPNGEGNTGLL 276 Sbjct: 222 - 280 Query: 277 GAIRPDDLQLLSSPPESGATGNTLPGTVQVSTYLGRSYQYQVETELG-VFTVNQELEHPF 335 Sbjct: 281 ------- 333 Query: 336 GQGEKVTVYFPKEKLVLV 353 Sbjct: 334 351 >AGl193 [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components Length = 134 Score = 270 bits (690), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 0/318 (0%), Positives = 0/318 (0%), Gaps = 9/318 (2%) Query: 37 PSGCGKTTTLRLIAGFLSAEAGNFMFSGKDYTKVPVEKRNFGFVFQNYALFPHLSVYDNV 96 K ++ A A + + + + Sbjct: 42 FQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKG 101 Query: 97 AFGLRLRKLKEAEVQKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLL 156 Sbjct: 102 161 Query: 157 FDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLD 216 Sbjct: 162 221 Query: 217 QPQAIFKYPASEFVARFIGFGNFISFDGRNDEGTDIELSRGTLKFLAVKRPNGEGNTGLL 276 Sbjct: 222 - 280 Query: 277 GAIRPDDLQLLSSPPESGATGNTLPGTVQVSTYLGRSYQYQVETELG-VFTVNQELEHPF 335 Sbjct: 281 ------- 333 Query: 336 GQGEKVTVYFPKEKLVLV 353 Sbjct: 334 351 >AGl1936 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 134 Score = 270 bits (690), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 0/318 (0%), Positives = 0/318 (0%), Gaps = 9/318 (2%) Query: 37 PSGCGKTTTLRLIAGFLSAEAGNFMFSGKDYTKVPVEKRNFGFVFQNYALFPHLSVYDNV 96 K ++ A A + + + + Sbjct: 42 FQELPKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQETSGSGRIQTLRVVARQKG 101 Query: 97 AFGLRLRKLKEAEVQKRVTRMLEIVSLGGFEKRLPAALSGGQRQRVAIARALVIEPDLLL 156 Sbjct: 102 161 Query: 157 FDEPLSNLDANLRVNMRVEIRRIQQELGITTVYVSHDQEECFSISDQVAVMNNGKIEQLD 216 Sbjct: 162 221 Query: 217 QPQAIFKYPASEFVARFIGFGNFISFDGRNDEGTDIELSRGTLKFLAVKRPNGEGNTGLL 276 Sbjct: 222 - 280 Query: 277 GAIRPDDLQLLSSPPESGATGNTLPGTVQVSTYLGRSYQYQVETELG-VFTVNQELEHPF 335 Sbjct: 281 ------- 333 Query: 336 GQGEKVTVYFPKEKLVLV 353 Sbjct: 334 351 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,402,175 Number of extensions: 1099754 Number of successful extensions: 8758 Number of sequences better than 1.0e-05: 2131 Number of HSP's gapped: 6221 Number of HSP's successfully gapped: 2321 Length of query: 354 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 247 Effective length of database: 26,037,693 Effective search space: 6431310171 Effective search space used: 6431310171 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)