BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0004.p (320 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1683.06c [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 202 5e-52 ZyeiK [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 188 8e-48 ECs3054 [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 188 8e-48 ZyeiK [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 187 1e-47 yeiK [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase 187 1e-47 >SPBC1683.06c [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase Length = 310 Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 121/316 (38%), Positives = 176/316 (55%), Gaps = 14/316 (4%) Query: 6 KVILDVDTGVDDALAIMLAVTSGRFDILGITTVSGNVSLDQATLNTCKILELLGVSGQIP 65 K+I+D D G DDA+ +LA+ S ++LG+TTV+GNV + T N ++L+L G IP Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEIELLGVTTVAGNVPVSMTTRNALQMLDLAG-RPDIP 60 Query: 66 VYRGADKPLVREAVFEHRVHGSDGIGGALGDMPVTKQPEAEAAADFIIRQVLA-QPGEVT 124 VY G++KPL+R + VHG+ G GA+ P K+ E A DFII + +PG +T Sbjct: 61 VYAGSNKPLLRAPITATHVHGASGFEGAVLPPPSRKENEGHAV-DFIIDTLRNNEPGTIT 119 Query: 125 LIMTAPLTNLANALQKCPELVQHAAEVIVMGGVVQGYGNITPTAEYNMYVDPEAAKQVLA 184 + PLTN+A AL K PE++Q A ++++M G GNITP AE+N+YVDP AA+ VL+ Sbjct: 120 ICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAAQMVLS 179 Query: 185 AGFPRLTLVGLDVTRRALLGAEDIQKLH------NPVIREYVETSTAGYRARYYERNGVQ 238 +G P + ++ LD+T + A+ I ++ PV+ ++ A Y A+ Y G Sbjct: 180 SGIP-IVMMPLDITHQLHTSAKRIARMEALPNRVGPVVAAWLRMEKA-YEAKKY---GTD 234 Query: 239 ACALHDPLAVGVALNCGLVTTRDYYVDVETRSELCDGQTVCDFQNRLNRPPNVTVCLEVD 298 LHDP V L + + R V +ET+SEL G +V D+ P NVT VD Sbjct: 235 GGPLHDPNTVMWLLRPDIYSGRKVNVQIETQSELTMGMSVVDWWQVGLLPANVTFLRTVD 294 Query: 299 APAFLECFINSLNQEP 314 F E I L + P Sbjct: 295 DDEFYEVLIERLGRLP 310 >ZyeiK [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase Length = 313 Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 176/306 (57%), Gaps = 15/306 (4%) Query: 4 RKKVILDVDTGVDDALAIMLAVTSGRFDILGITTVSGNVSLDQAT---LNTCKILELLGV 60 ++K+ILD D G DDA+AIM+A D+LGIT V+GN +LD+ LN C+ LE+ Sbjct: 3 KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI--- 59 Query: 61 SGQIPVYRGADKPLVREAVFEHRVHGSDGIGGALGDMPVTKQPEAEAAADFIIRQVLAQP 120 +PVY G +P++R+ + +HG G+ G + + P+T+Q E+ A +II ++A Sbjct: 60 --NVPVYAGMPQPIMRQQIVADNIHGETGLDGPVFE-PLTRQAESTHAVKYIIDTLMASD 116 Query: 121 GEVTLIMTAPLTNLANALQKCPELVQHAAEVIVMGGVVQGYGNITPTAEYNMYVDPEAAK 180 G++TL+ PL+N+A A++ P ++ E+++MGG G GN TP+AE+N++ DPEAA+ Sbjct: 117 GDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG-AYGTGNFTPSAEFNIFADPEAAR 175 Query: 181 QVLAAGFPRLTLVGLDVTRRALLGAEDIQKLH---NPVIREYVETSTAGYRARYYERNGV 237 V +G P L ++GLD+T + + + I ++ P + + + + +E G+ Sbjct: 176 VVFTSGVP-LVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQ-FENYGL 233 Query: 238 QACALHDPLAVGVALNCGLVTTRDYYVDVETRSELCDGQTVCDFQNRLNRPPNVTVCLEV 297 +HD +G +N + T++ YV+V+ S C G+TVCD L +P N V + + Sbjct: 234 AGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITI 293 Query: 298 DAPAFL 303 D F Sbjct: 294 DTDWFW 299 >ECs3054 [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase Length = 313 Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 177/306 (57%), Gaps = 15/306 (4%) Query: 4 RKKVILDVDTGVDDALAIMLAVTSGRFDILGITTVSGNVSLDQAT---LNTCKILELLGV 60 ++K+ILD D G DDA+AIM+A D+LGIT V+GN +LD+ LN C+ LE+ Sbjct: 3 KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI--- 59 Query: 61 SGQIPVYRGADKPLVREAVFEHRVHGSDGIGGALGDMPVTKQPEAEAAADFIIRQVLAQP 120 +PVY G +P++R+ + +HG G+ G + + P+T+Q E+ A +II ++A Sbjct: 60 --NVPVYAGMPQPIMRQQIVADNIHGDTGLDGPVFE-PLTRQAESTHAVKYIIDTLMASD 116 Query: 121 GEVTLIMTAPLTNLANALQKCPELVQHAAEVIVMGGVVQGYGNITPTAEYNMYVDPEAAK 180 G++TL+ PL+N+A A++ P ++ E+++MGG G GN TP+AE+N++ DPEAA+ Sbjct: 117 GDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG-AYGTGNFTPSAEFNIFADPEAAR 175 Query: 181 QVLAAGFPRLTLVGLDVTRRALLGAEDIQKLH---NPVIREYVETSTAGYRARYYERNGV 237 V +G P L ++GLD+T + + + I ++ P + + + + +E G+ Sbjct: 176 VVFTSGVP-LVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQ-FENYGL 233 Query: 238 QACALHDPLAVGVALNCGLVTTRDYYVDVETRSELCDGQTVCDFQNRLNRPPNVTVCLEV 297 +HD +G +N + T++ YV+V+ S C G+TVCD L +P N V + + Sbjct: 234 AGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITI 293 Query: 298 DAPAFL 303 D+ F Sbjct: 294 DSDWFW 299 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 176/306 (57%), Gaps = 15/306 (4%) Query: 4 RKKVILDVDTGVDDALAIMLAVTSGRFDILGITTVSGNVSLDQAT---LNTCKILELLGV 60 ++K+ILD D G DDA+AIM+A D+LGIT V+GN +LD+ LN C+ LE+ Sbjct: 3 KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI--- 59 Query: 61 SGQIPVYRGADKPLVREAVFEHRVHGSDGIGGALGDMPVTKQPEAEAAADFIIRQVLAQP 120 +PVY G +P++R+ + +HG G+ G + + P+T+Q E+ A +II ++A Sbjct: 60 --NVPVYAGMPQPIMRQQIVADNIHGETGLDGPVFE-PLTRQAESTHAVKYIIDTLMASD 116 Query: 121 GEVTLIMTAPLTNLANALQKCPELVQHAAEVIVMGGVVQGYGNITPTAEYNMYVDPEAAK 180 G++TL+ PL+N+A A++ P ++ E+++MGG G GN TP+AE+N++ DPEAA+ Sbjct: 117 GDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG-AYGTGNFTPSAEFNIFADPEAAR 175 Query: 181 QVLAAGFPRLTLVGLDVTRRALLGAEDIQKLH---NPVIREYVETSTAGYRARYYERNGV 237 V +G P L ++GLD+T + + + I ++ P + + + + +E G+ Sbjct: 176 VVFTSGVP-LVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQ-FENYGL 233 Query: 238 QACALHDPLAVGVALNCGLVTTRDYYVDVETRSELCDGQTVCDFQNRLNRPPNVTVCLEV 297 +HD +G +N + T++ YV+V+ S C G+TVCD L +P N V + + Sbjct: 234 AGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITI 293 Query: 298 DAPAFL 303 D F Sbjct: 294 DTDWFW 299 >yeiK [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase Length = 313 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 176/306 (57%), Gaps = 15/306 (4%) Query: 4 RKKVILDVDTGVDDALAIMLAVTSGRFDILGITTVSGNVSLDQAT---LNTCKILELLGV 60 ++K+ILD D G DDA+AIM+A D+LGIT V+GN +LD+ LN C+ LE+ Sbjct: 3 KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEI--- 59 Query: 61 SGQIPVYRGADKPLVREAVFEHRVHGSDGIGGALGDMPVTKQPEAEAAADFIIRQVLAQP 120 +PVY G +P++R+ + +HG G+ G + + P+T+Q E+ A +II ++A Sbjct: 60 --NVPVYAGMPQPIMRQQIVADNIHGETGLDGPVFE-PLTRQAESTHAVKYIIDTLMASD 116 Query: 121 GEVTLIMTAPLTNLANALQKCPELVQHAAEVIVMGGVVQGYGNITPTAEYNMYVDPEAAK 180 G++TL+ PL+N+A A++ P ++ E+++MGG G GN TP+AE+N++ DPEAA+ Sbjct: 117 GDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG-AYGTGNFTPSAEFNIFADPEAAR 175 Query: 181 QVLAAGFPRLTLVGLDVTRRALLGAEDIQKLH---NPVIREYVETSTAGYRARYYERNGV 237 V +G P L ++GLD+T + + + I ++ P + + + + +E G+ Sbjct: 176 VVFTSGVP-LVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQ-FENYGL 233 Query: 238 QACALHDPLAVGVALNCGLVTTRDYYVDVETRSELCDGQTVCDFQNRLNRPPNVTVCLEV 297 +HD +G +N + T++ YV+V+ S C G+TVCD L +P N V + + Sbjct: 234 AGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITI 293 Query: 298 DAPAFL 303 D F Sbjct: 294 DTDWFW 299 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,008,564 Number of extensions: 932310 Number of successful extensions: 1924 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 1788 Number of HSP's successfully gapped: 39 Length of query: 320 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 214 Effective length of database: 26,153,027 Effective search space: 5596747778 Effective search space used: 5596747778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)