BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0003.p
         (198 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl890 [E] COG0687 Spermidine/putrescine-binding periplasmic pro...    85   6e-17
AGl198 [P] COG1840 ABC-type Fe3+ transport system, periplasmic c...    55   5e-08
AGl1981 [L] COG1961 Site-specific recombinases, DNA invertase Pi...    55   5e-08
AGl1966 [R] COG4178 ABC-type uncharacterized transport system, p...    51   1e-06
AGl196 [P] COG1840 ABC-type Fe3+ transport system, periplasmic c...    51   1e-06

>AGl890 [E] COG0687 Spermidine/putrescine-binding periplasmic protein
          Length = 832

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 8/198 (4%), Positives = 31/198 (15%), Gaps = 1/198 (0%)

Query: 1   VKSWSDMWTQ-FDKNLTLPAITATAGPMIVDAASVAAGGSEFNEDQAFTKLKELDSNVVK 59
               +   +                     +  +          D A  +          
Sbjct: 142 RGLNAQGISAAARILDPAAGAGVFLLAAFRELVAARWRSEGHRPDTAALREILYKQVRGF 201

Query: 60  YYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDAKFVAPSEGAYAVMNTVNVVKGSD 119
             ++ +      G   ++          D          V         ++     +   
Sbjct: 202 DINEAALRFCALGLYLLSIELDPNPKPVDKLHFDDLRGVVLHRPVDTTDVDRPEAKQLGS 261

Query: 120 NKELAEAFINWQLSKEVQEKSAKAKVDSPVNTEVVLTDEEAVGVTYGADVISKLRKLDMS 179
              L     + Q    +      +         ++    +      G  + +      + 
Sbjct: 262 LGSLIGEEHDGQYDLVIGNPPWASATGLEDWNLLLTEVHKIARSRLGDGITAPPLPNAVL 321

Query: 180 FVNQHITEWTDRFNREIG 197
            +                
Sbjct: 322 DLPFVWRAMRWAKPDAQI 339


>AGl198 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component
          Length = 134

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 0/158 (0%), Positives = 0/158 (0%), Gaps = 11/158 (6%)

Query: 41  FNEDQAFTKLKELDSNVVKYYSQTSEYVNMFGQ-EEIAGGPIMEMYFKDLQAAVPDAKFV 99
                                                                       
Sbjct: 185 -                                                            243

Query: 100 APSEGAYAVMNTVNVVKGSDNKELAEAFINWQLSKEVQEKSAKAKVDS-PVNTEVVLTDE 158
                                                                       
Sbjct: 244 -                                                            302

Query: 159 EAVGVTYGADVISKLRKLDMSFVNQHITEWTDRFNREI 196
                                                 
Sbjct: 303 -------                                333


>AGl1981 [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs
          Length = 134

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 0/158 (0%), Positives = 0/158 (0%), Gaps = 11/158 (6%)

Query: 41  FNEDQAFTKLKELDSNVVKYYSQTSEYVNMFGQ-EEIAGGPIMEMYFKDLQAAVPDAKFV 99
                                                                       
Sbjct: 185 -                                                            243

Query: 100 APSEGAYAVMNTVNVVKGSDNKELAEAFINWQLSKEVQEKSAKAKVDS-PVNTEVVLTDE 158
                                                                       
Sbjct: 244 -                                                            302

Query: 159 EAVGVTYGADVISKLRKLDMSFVNQHITEWTDRFNREI 196
                                                 
Sbjct: 303 -------                                333


>AGl1966 [R] COG4178 ABC-type uncharacterized transport system, permease and
           ATPase components
          Length = 134

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/107 (0%), Positives = 0/107 (0%), Gaps = 6/107 (5%)

Query: 41  FNEDQAFTKLKELDSNVVKYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDA---K 97
                                                                       
Sbjct: 203 ---                                                          259

Query: 98  FVAPSEGAYAVMNTVNVVKGSDNKELAEAFINWQLSKEVQEKSAKAK 144
                                                          
Sbjct: 260                                                 306


>AGl196 [P] COG1840 ABC-type Fe3+ transport system, periplasmic component
          Length = 134

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 0/107 (0%), Positives = 0/107 (0%), Gaps = 6/107 (5%)

Query: 41  FNEDQAFTKLKELDSNVVKYYSQTSEYVNMFGQEEIAGGPIMEMYFKDLQAAVPDA---K 97
                                                                       
Sbjct: 203 ---                                                          259

Query: 98  FVAPSEGAYAVMNTVNVVKGSDNKELAEAFINWQLSKEVQEKSAKAK 144
                                                          
Sbjct: 260                                                 306


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.312    0.127    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,236,800
Number of extensions: 528117
Number of successful extensions: 889
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 15
Length of query: 198
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 97
Effective length of database: 26,729,697
Effective search space: 2592780609
Effective search space used: 2592780609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)