BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0010.p
         (249 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP0884 [S] COG4947 Uncharacterized protein conserved in bacteria      133   2e-31
SP0883 [S] COG4947 Uncharacterized protein conserved in bacteria       73   4e-13

>SP0884 [S] COG4947 Uncharacterized protein conserved in bacteria
          Length = 135

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 1/131 (0%)

Query: 117 LLISGCSMGAYYSASFFFRHPHVFDTLIALSGVYSTYYFFGDYMSE-TVYLNSPLHYLPN 175
           ++ +GCSMGAY++ +FF +HP VF  +IALSGVY   +F GDY ++  +Y NSP+ Y+ N
Sbjct: 1   MMTTGCSMGAYHALNFFLQHPDVFTKVIALSGVYDARFFVGDYYNDDAIYQNSPVDYIWN 60

Query: 176 LTDDDYLNAYRSSRIILCVGQGAYEDEMLHETRLLQDLLQRKHIPAQIEYWGHDVDHDWP 235
             D  +++ YR + I+LC G GA+E + L     L++   +K IPA    WGHDV HDW 
Sbjct: 61  QNDGWFIDRYRQAEIVLCTGLGAWEQDGLPSFYKLKEAFDKKQIPAWFAEWGHDVAHDWE 120

Query: 236 WWNKQIHYYVG 246
           WW KQ+ Y++G
Sbjct: 121 WWRKQMPYFLG 131


>SP0883 [S] COG4947 Uncharacterized protein conserved in bacteria
          Length = 111

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 2/108 (1%)

Query: 1   MRISYHKEYSHHLHRDMEYKVYGHAGKPMLVFPTSLGRFYQYEDSGMIQTLSEFIDAGKL 60
           M I +   +S HL+R+M    YGH G P++VF +S G   +Y D GMI   + FI+ G +
Sbjct: 1   MHIEHLSHWSGHLNREMYLNRYGHGGIPVVVFASSGGSHNEYYDFGMIDACASFIEEGLV 60

Query: 61  QIWACDTLDEETFFSSHWNHEDKVYRHEQYDKYIMQELIPGILHSSKE 108
           Q +   +LD E++ ++  N  D+   H  Y++Y+++E I  +L S+++
Sbjct: 61  QFFTLSSLDSESWLATWKNAHDQAEMHRAYERYVIEEAI--LLSSTRQ 106


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,184,337
Number of extensions: 806200
Number of successful extensions: 1173
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 145
Effective length of database: 26,383,695
Effective search space: 3825635775
Effective search space used: 3825635775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)