BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0004.p (194 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3198 [K] COG0782 Transcription elongation factor 162 4e-40 CC2848 [K] COG0782 Transcription elongation factor 127 1e-29 mll2568 [K] COG0782 Transcription elongation factor 126 3e-29 AGc3965 [K] COG0782 Transcription elongation factor 124 7e-29 SMc01218 [K] COG0782 Transcription elongation factor 122 4e-28 >CAC3198 [K] COG0782 Transcription elongation factor Length = 158 Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 36 MSNEEVF-LTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSF 94 MS E+ + +T +G+ KLEEEL LKT KRKE+ ++K+A+S+GDL ENSEY AK DQ+F Sbjct: 1 MSQEKKYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAF 60 Query: 95 METRIMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDN 154 +E RI +E ML A ++DES + VSVGS V + D ++ E+IE+ +VG AEAD ++N Sbjct: 61 VEGRIAQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIEN 120 Query: 155 KISYESPLGKELLGKKVGDIISVNAPMGIIQYELLEIK 192 KIS ESP+G L+GKKVGD I VN P G+ +Y++L IK Sbjct: 121 KISNESPVGSALIGKKVGDEIEVNVPDGVDKYKILAIK 158 >CC2848 [K] COG0782 Transcription elongation factor Length = 157 Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 104/156 (66%) Query: 39 EEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFMETR 98 E+V +T G L+EEL+ LKTV+R + A + A S+GDL EN+EYH+AKE Q ++E + Sbjct: 2 EKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQ 61 Query: 99 IMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNKISY 158 I +E + +AQ++D + + +V G+ V++ D + E+ Y++VG EADV +IS Sbjct: 62 IAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRISL 121 Query: 159 ESPLGKELLGKKVGDIISVNAPMGIIQYELLEIKLL 194 SPL + ++GK+VG+++ VN P G+ YE+L+++ L Sbjct: 122 SSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157 >mll2568 [K] COG0782 Transcription elongation factor Length = 784 Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 11/154 (7%), Positives = 30/154 (19%) Query: 41 VFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFMETRIM 100 + + L + L + +I + + + Q T Sbjct: 4 ERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEP 63 Query: 101 ILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNKISYES 160 + + T + M ++ A + Sbjct: 64 GVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTID 123 Query: 161 PLGKELLGKKVGDIISVNAPMGIIQYELLEIKLL 194 +E+L + + + L Sbjct: 124 EREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLN 157 >AGc3965 [K] COG0782 Transcription elongation factor Length = 289 Score = 124 bits (312), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 5/154 (3%), Positives = 21/154 (13%) Query: 39 EEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFMETR 98 + +K + + + E + + Sbjct: 3 SMADSRETLTINAFVVGYPIKHSRSPIIHSYWLKKFGIAGSYTAVEVSPDDFPKFIATLK 62 Query: 99 IMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNKISY 158 + + + + A +S Sbjct: 63 EGKPGAAVGGNATIPHKEAAYRLADHPDALAEELGAANTIWMEEGKLHATNTDGYGFVSN 122 Query: 159 ESPLGKELLGKKVGDIISVNAPMGIIQYELLEIK 192 + + + L + Sbjct: 123 LDERHPGWDKTQRAVVFGAGGASRAVIQSLRDRD 156 >SMc01218 [K] COG0782 Transcription elongation factor Length = 158 Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 98/154 (63%) Query: 39 EEVFLTKEGLAKLEEELRDLKTVKRKELAARLKLAISYGDLKENSEYHSAKEDQSFMETR 98 ++V +T+ G L+EELR + +R + + A ++GDL EN+EYH+AKE QS E R Sbjct: 3 DKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGR 62 Query: 99 IMILEKMLTKAQIVDESSMDLSKVSVGSLVTLNDVEYSEKIEYRVVGPAEADVLDNKISY 158 I LE ++ +A+++D S M SK+ G+ V L D + E+ Y++VG EADV +IS Sbjct: 63 ISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRISI 122 Query: 159 ESPLGKELLGKKVGDIISVNAPMGIIQYELLEIK 192 SP+ + L+GK+VGD I VNAP G YE+L ++ Sbjct: 123 SSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQ 156 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.133 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,794,682 Number of extensions: 477582 Number of successful extensions: 973 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 942 Number of HSP's successfully gapped: 40 Length of query: 194 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 93 Effective length of database: 26,729,697 Effective search space: 2485861821 Effective search space used: 2485861821 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 113 (48.1 bits)