BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0002.p
         (112 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN0589 [K] COG1733 Predicted transcriptional regulators                98   3e-21
Cj1556 [K] COG1733 Predicted transcriptional regulators                92   3e-19
SMc02381 [K] COG1733 Predicted transcriptional regulators              91   3e-19
BH0737 [K] COG1733 Predicted transcriptional regulators                91   4e-19
MA0333 [K] COG1733 Predicted transcriptional regulators                90   1e-18

>FN0589 [K] COG1733 Predicted transcriptional regulators
          Length = 107

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 68/102 (66%), Gaps = 3/102 (2%)

Query: 8   ILTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLR 67
           +L K  P  ACP+  TL +I  KW  LIIRDLL +GT RFS+L +S+  IS K L   LR
Sbjct: 1   MLKKDLP--ACPVELTLLLISNKWKVLIIRDLL-DGTKRFSELKKSINNISQKVLTSNLR 57

Query: 68  ELESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109
           E+E + +L R VYPEVPPRVEYTLT  G  L+ +  ++ ++G
Sbjct: 58  EMEENDLLTRKVYPEVPPRVEYTLTDIGYSLKTLLDDMDKWG 99


>Cj1556 [K] COG1733 Predicted transcriptional regulators
          Length = 110

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 6/97 (6%)

Query: 18  CPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSL-----EGISPKTLALRLRELESH 72
           CPI  TL++IG KW  LIIRDLL +GT RF +L +S+     + IS   L   LRELE  
Sbjct: 8   CPIETTLNLIGNKWKILIIRDLL-QGTKRFGELRKSISFTKNQNISQNVLTQNLRELEEA 66

Query: 73  GILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109
            ++ R VY EVPP+VEY+LT  G  LE I   L+ +G
Sbjct: 67  KLIKRKVYAEVPPKVEYSLTSLGNSLESILKSLENWG 103


>SMc02381 [K] COG1733 Predicted transcriptional regulators
          Length = 133

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 9   LTKGTPGEACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLRE 68
           LT   PG  CP+   L  I  KW  +I+  L+ EG +RF++L R L  ++P+ L  +LRE
Sbjct: 8   LTNTFPG--CPVESALSFIDGKWKGVILYHLMSEGVLRFNELRRRLPSVTPRMLTRQLRE 65

Query: 69  LESHGILMRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109
           LE   +L RTV+P VPPRV+Y LT +GE L+ + + LK +G
Sbjct: 66  LEEAALLSRTVFPVVPPRVDYALTARGESLKPVIMALKAWG 106


>BH0737 [K] COG1733 Predicted transcriptional regulators
          Length = 118

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 66/94 (70%), Gaps = 1/94 (1%)

Query: 16  EACPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLRELESHGIL 75
           E CP+  TLDVIG KW  +I+  LL E   RF++L R + GI+ + L+L+LRELE  GI+
Sbjct: 12  EGCPVEATLDVIGGKWKGVILYYLL-EEKRRFNELRRLMPGITQRILSLQLRELEKDGIV 70

Query: 76  MRTVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109
            R V+PEVPPRVEY++T+ G  LE I  +++ +G
Sbjct: 71  HREVFPEVPPRVEYSITEFGRTLEPIINQMRDWG 104


>MA0333 [K] COG1733 Predicted transcriptional regulators
          Length = 127

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 18  CPIAKTLDVIGTKWTFLIIRDLLIEGTMRFSDLLRSLEGISPKTLALRLRELESHGILMR 77
           CP+  TLDVIG KW  LI+  L  E  +RFS L ++++GISPK L  +LRELE+ G++ R
Sbjct: 13  CPVEATLDVIGGKWKPLILWQLRGE-KLRFSGLRQNMQGISPKMLTKQLRELEADGLVFR 71

Query: 78  TVYPEVPPRVEYTLTKKGEQLEGIFIELKRYG 109
            VYPE+PPRVEY+LT+ G+ +  +   L  +G
Sbjct: 72  EVYPEIPPRVEYSLTEFGKTVIPVLEALCEWG 103


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,436,062
Number of extensions: 304299
Number of successful extensions: 673
Number of sequences better than 1.0e-05: 80
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 80
Length of query: 112
Length of database: 38,378,431
Length adjustment: 79
Effective length of query: 33
Effective length of database: 29,267,045
Effective search space: 965812485
Effective search space used: 965812485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)