BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0015.p
         (54 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yocH_2 [S] COG3584 Uncharacterized protein conserved in bacteria    54   5e-08
lin2666_2 [S] COG3584 Uncharacterized protein conserved in bacteria    49   2e-06
CAC3033_2 [S] COG3584 Uncharacterized protein conserved in bacteria    49   2e-06
CAC2988_2 [S] COG3584 Uncharacterized protein conserved in bacteria    49   2e-06
BH0055_2 [S] COG3584 Uncharacterized protein conserved in bacteria     47   9e-06

>BS_yocH_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 143

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG G   A DTGGAIKGNK+DV+  S S A N+G K+ ++ V+
Sbjct: 97  VYVEGYGEATAADTGGAIKGNKIDVFVPSKSDASNWGVKTVSVKVL 142


>lin2666_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 137

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 1   VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
           VY+EG G   A DTGGAIKGNK+DV+  S+    N+G K   + ++
Sbjct: 91  VYVEGYGEAIAADTGGAIKGNKIDVHLNSVQEVNNWGVKQVKVQIL 136


>CAC3033_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 100

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 35/46 (76%)

Query: 1  VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
          +Y++G G+  A+DTGG I GN++D+++ S   A N+GR++ T++++
Sbjct: 54 LYVDGYGYAVADDTGGDIIGNRIDLFFSSKQDALNWGRRTVTVHIL 99


>CAC2988_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 93

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 34/46 (73%)

Query: 1  VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
          +Y+ G G+  AEDTGGAIKGN++D+++ S     ++G K+ T+Y++
Sbjct: 47 LYVPGYGYGVAEDTGGAIKGNRLDLFFTSERECYDWGAKNVTVYIL 92


>BH0055_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 96

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 32/46 (69%)

Query: 1  VYIEGLGFRRAEDTGGAIKGNKVDVYYESLSHARNFGRKSRTIYVI 46
          V++EG G   A DTGGAI GNK+DV+  S + A+ +GRK+  + ++
Sbjct: 50 VHVEGYGTAIAGDTGGAIVGNKIDVHMPSTAEAQRWGRKTVKVTIL 95


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,374,497
Number of extensions: 138268
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 7
Length of query: 54
Length of database: 38,378,431
Length adjustment: 27
Effective length of query: 27
Effective length of database: 35,264,413
Effective search space: 952139151
Effective search space used: 952139151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)