BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0014.p
         (262 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1450 [H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase           82   1e-15
STM1761 [C] COG2181 Nitrate reductase gamma subunit                    60   4e-09
TM1761 [L] COG0556 Helicase subunit of the DNA excision repair c...    60   4e-09

>STM1450 [H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase
          Length = 286

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 11/169 (6%), Positives = 26/169 (15%), Gaps = 2/169 (1%)

Query: 84  LLYPANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGVVVVPYSGVRRLLPSPHVMAGAE 143
                                        K          +                 A 
Sbjct: 19  SAAEFPMRRLGANVWPLNTVQFSNHTQYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAV 78

Query: 144 LTLSQDGTLVLDDFLMSMIEMGYERVERVENRGELSVRGGIIDFFPMTSPLAYRVELFDD 203
           L+         +   +  I    +            V G       +   +A     +  
Sbjct: 79  LSGYLGSAEQGEH--ILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRYAL 136

Query: 204 EVDSIRTFDPQDQRSIDKVRSVKITPAKEIIADQIRLDSASSEAAAMLE 252
               I   +  +   + K     +  A +   + I           +  
Sbjct: 137 PASDIIAPNLIELEILSKHSVNNVDDAVQAARELIAQGPEIVLVKHLAR 185


>STM1761 [C] COG2181 Nitrate reductase gamma subunit
          Length = 346

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 22/238 (9%), Positives = 49/238 (20%), Gaps = 14/238 (5%)

Query: 19  QSVTRGVAAGMKEQLISGLSGSARQIMLAALHEETGRPLLIVTHNMFSAQKMAEDLQEAL 78
            ++T G      +         A+ I L  + E    P    T  +          +   
Sbjct: 19  GTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGS 78

Query: 79  SPDRVLLY-------------PANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGVVVVP 125
               ++                 ++ +  +    +     +R+                 
Sbjct: 79  REKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPT 138

Query: 126 YSGVRRLLPSPHVMAGAELTLSQDGTLVLDDFLMSMIEMGYERVERVENRGELSVRGGII 185
               + L  S    A A   L     L        +  +G            L +     
Sbjct: 139 NCFGK-LGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHD 197

Query: 186 DFFPMTSPLAYRVELFDDEVDSIRTFDPQDQRSIDKVRSVKITPAKEIIADQIRLDSA 243
               +T    Y +     EV        +    +        T   + +       + 
Sbjct: 198 LPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGAR 255


>TM1761 [L] COG0556 Helicase subunit of the DNA excision repair complex
          Length = 673

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 13/238 (5%), Positives = 40/238 (16%), Gaps = 14/238 (5%)

Query: 19  QSVTRGVAAGMKEQLISGLSGSARQIMLAALHEETGRPLLIVTHNMFSAQKMAEDLQEAL 78
             +    +   +                A                     +     +   
Sbjct: 19  LVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78

Query: 79  SPDRVLLY-------------PANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGVVVVP 125
                                      +          L +  + L +  +     ++  
Sbjct: 79  LMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLIST 138

Query: 126 YSGVRRLLPSPHVMAGAELTLSQDGTLVLDDFLMSMIEMGYERVERVENRGELSVRGGII 185
            S  +         A A     +D        L          ++  +     ++     
Sbjct: 139 ISNWK-NDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQAN 197

Query: 186 DFFPMTSPLAYRVELFDDEVDSIRTFDPQDQRSIDKVRSVKITPAKEIIADQIRLDSA 243
           +          R  L D+  D+  +     +  +       +    +      R    
Sbjct: 198 EEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARP 255


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 18,009,103
Number of extensions: 716994
Number of successful extensions: 1946
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 3
Length of query: 262
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 158
Effective length of database: 26,383,695
Effective search space: 4168623810
Effective search space used: 4168623810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)