BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0013.p
         (183 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yabF [L] COG1658 Small primase-like proteins (Toprim domain)       188   3e-48
SA0450 [L] COG1658 Small primase-like proteins (Toprim domain)        142   4e-34

>BS_yabF [L] COG1658 Small primase-like proteins (Toprim domain)
          Length = 176

 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 0/178 (0%), Positives = 0/178 (0%), Gaps = 4/178 (2%)

Query: 2   IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61
           +               +   +A T+E        ++     + +      +        +
Sbjct: 3   LIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQ 62

Query: 62  RIRKIVSSKVPGCKHAFIPE---KDATRKGDIGVENASPEAIRHALEHVHTSFEGAPALI 118
              +  S                      G   +                    GA    
Sbjct: 63  HPMQWYSIPPLLKLWIDKVFSHGWAYGHGG-TALHGKHLLWAVTTGGGESHFEIGAHPGF 121

Query: 119 GMEDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIALAQI 176
                                                                     
Sbjct: 122                                                            179


>SA0450 [L] COG1658 Small primase-like proteins (Toprim domain)
          Length = 178

 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/173 (46%), Positives = 105/173 (60%), Gaps = 1/173 (0%)

Query: 2   IKELIVVEGKSDTVAIKRAVEADTIETGGSAVDRKVIAKIALAMERRGVIILTDPDHAGE 61
           I E IVVEG+ DT  +KRAVE DTIET GSA++ + +  I  A + RGVI+LTDPD  G+
Sbjct: 3   INEFIVVEGRDDTERVKRAVECDTIETNGSAINEQTLEVIRNAQQSRGVIVLTDPDFPGD 62

Query: 62  RIRKIVSSKVPGCKHAFIP-EKDATRKGDIGVENASPEAIRHALEHVHTSFEGAPALIGM 120
           +IR  ++  V G KHA+I  EK   +KG IGVE+A    I+ AL HV + F+ A   I  
Sbjct: 63  KIRSTITEHVKGVKHAYIDREKAKNKKGKIGVEHADLIDIKEALMHVSSPFDEAYESIDK 122

Query: 121 EDLMAAGMMVHPRAAERRMALGNLLGIGYCNGKQLYKRLAMFGITREEFSIAL 173
             L+  G++V   A  RR  L   L IG+ NGKQL K+L  FG T  +   AL
Sbjct: 123 SVLIELGLIVGKDARRRREILSRKLRIGHSNGKQLLKKLNAFGYTEADVRQAL 175


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,262,932
Number of extensions: 504633
Number of successful extensions: 1488
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1487
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 83
Effective length of database: 26,845,031
Effective search space: 2228137573
Effective search space used: 2228137573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)