BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0006.p
         (79 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0235 [M] COG2088 Uncharacterized protein, involved in the reg...   119   1e-27
lin0236 [M] COG2088 Uncharacterized protein, involved in the reg...   114   3e-26

>lin0235 [M] COG2088 Uncharacterized protein, involved in the regulation
          of septum location
          Length = 102

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/67 (83%), Positives = 61/67 (91%)

Query: 1  MKAIASITIDNEFVVHDIRVIDGNNGMFVAMPSKRTPDGEFRDIAHPISSGTREKIQSAV 60
          MKAI+SITID EFV+HDIRVIDGN G+FVAMPSKRTPDGEFRDIAHPI+SGTR KIQ AV
Sbjct: 17 MKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAV 76

Query: 61 LAEYDRA 67
          LA Y+ A
Sbjct: 77 LAAYEVA 83


>lin0236 [M] COG2088 Uncharacterized protein, involved in the regulation
          of septum location
          Length = 102

 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 59/68 (86%)

Query: 1  MKAIASITIDNEFVVHDIRVIDGNNGMFVAMPSKRTPDGEFRDIAHPISSGTREKIQSAV 60
          M+AIASIT+D EFVVHDIRVIDGNNG+FVAMPSKR  DGEFRDIAHPI+S TR KIQ  V
Sbjct: 17 MRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVV 76

Query: 61 LAEYDRAA 68
          LAEY+R  
Sbjct: 77 LAEYERVG 84


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,924,606
Number of extensions: 201487
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 38,378,431
Length adjustment: 50
Effective length of query: 29
Effective length of database: 32,611,731
Effective search space: 945740199
Effective search space used: 945740199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)