BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0021.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2749 [P] COG1122 ABC-type cobalt transport system, ATPase com... 263 2e-70 L76755 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 249 5e-66 SA2020 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 245 7e-65 BH0165 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 242 6e-64 SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 240 2e-63 >lin2749 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 288 Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/282 (48%), Positives = 189/282 (67%), Gaps = 3/282 (1%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I+L+Q+ Y Y +NS +++ AL ++ + GS + I G TGSGKSTLLQ N +L PT Sbjct: 1 MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 +G + V D I AG K KL LR++VG+VFQFPE Q+FE+TVEKD+CFGP+NFG+S E+ Sbjct: 61 EGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEED 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK RA++ + E+GL +L+R+PF LSGGQMR+ AIA VLAMDPE++VLDEPTA LDP Sbjct: 121 AKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 R E++ L E+G T ++VTH M++ YA++ +L+K G + GS E+ +PD L Sbjct: 181 REEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLKIGSPREIFAKPDEL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 GL VP +R+ +F + K LT +AEL A + Sbjct: 241 VDLGLSVPDVVRFQGLFERKFNVKLTKTCLT---IAELTAEM 279 >L76755 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 288 Score = 249 bits (635), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 128/280 (45%), Positives = 185/280 (66%), Gaps = 1/280 (0%) Query: 3 IQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPTQG 62 I+ ++V+YTY NS + AL +I L + KGS T + G TGSGKSTLLQ NG+L+PTQG Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTQG 61 Query: 63 TVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEEAK 122 TV+V D+ + + K ++ P+R++VG+VFQFPE Q+FE+TV KD+ FGP NFG+S EEA+ Sbjct: 62 TVRVGDIVVTSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGISKEEAE 121 Query: 123 ERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVSRA 182 + A + + +GL ++PF LSGGQMR+ AIA +LAM+PE++VLDEPTA LDP +R Sbjct: 122 KIAAEKLEMVGLSKEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181 Query: 183 ELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDILAR 242 E++ E + H+ G+T+++VTH MD++ YAD LL+ G I G+ ++ +E D L Sbjct: 182 EMMKLFESI-HQTGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKA 240 Query: 243 CGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAELIASL 282 LGVP + + + EK +T L L+ SL Sbjct: 241 HELGVPKATHFADQLQKTGVYTFEKLPITRAELVNLLTSL 280 >SA2020 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 286 Score = 245 bits (625), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 181/278 (65%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I+ VSYTY + + ++ A+H++ +G I G TGSGKSTL+Q N +LKPT Sbjct: 1 MTIRFDNVSYTYQKGTPYQHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 GTV V D+TI K + P+R+R+G+VFQFPE Q+FEDTVE+++ FGP NF M+ +E Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMNLDE 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 AK A + ++++G +++++PF++SGGQMRK AI S+LAM+P+I+V+DEPTA LDP S Sbjct: 121 AKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVVDEPTAGLDPQS 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 + +++ L+ L ++ + II+++H M+E+ YAD I++K+G I Q S EL ++ L Sbjct: 181 KRQVMRLLKSLQTDENKAIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240 Query: 241 ARCGLGVPHSLRYWRGIADRFGLAGEKPRLTPESLAEL 278 A +G+P ++ ++ + LT E+ L Sbjct: 241 ADWHIGLPEIVQLQYDFEQKYQTKLKDIALTEEAFVSL 278 >BH0165 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 282 Score = 242 bits (617), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 121/267 (45%), Positives = 177/267 (66%) Query: 14 ENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPTQGTVQVLDVTIRA 73 + S +++ AL +++ IP GS T I G TGSGKSTL Q FNG+L+P++GTV++ ++ I A Sbjct: 2 KGSPFEKVALSDVSFTIPSGSFTAIIGHTGSGKSTLAQHFNGLLRPSKGTVRLGELEITA 61 Query: 74 GEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEEAKERARQAMLEMG 133 +K P L +RR+VGLVFQ+PE Q+FE+TVEKD+CFGP+N+G+S AK+RA++ + +G Sbjct: 62 DQKPPSLKEIRRKVGLVFQYPEHQLFEETVEKDICFGPMNYGVSEARAKKRAKELLHLVG 121 Query: 134 LDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVSRAELISQLERLCH 193 L L +PF LSGGQMR+ AIA VLAM+P+++VLDEPTA LDP + ++ RL Sbjct: 122 LPDTYLQASPFSLSGGQMRRVAIAGVLAMEPDVLVLDEPTAGLDPEGQRLIMDMFYRLHQ 181 Query: 194 EQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDILARCGLGVPHSLRY 253 E+ T ++VTH M + +AD+ I++ G +A G + D L GL VP +L+ Sbjct: 182 EKELTTVLVTHNMSDAAKFADQIIVMSQGNVAMTGDRQTVFARADELVALGLDVPETLQL 241 Query: 254 WRGIADRFGLAGEKPRLTPESLAELIA 280 + +RFGL P + E LA+ +A Sbjct: 242 LLQVKERFGLHDVPPLFSLEELADFLA 268 >SP2220 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/260 (45%), Positives = 176/260 (67%), Gaps = 1/260 (0%) Query: 1 MAIQLQQVSYTYAENSLWKQTALHEITLGIPKGSLTGIAGATGSGKSTLLQLFNGILKPT 60 M I L+ V++TY E + AL +++L I GS T + G TGSGKST+LQL NG+L P+ Sbjct: 1 MGIALENVNFTYQEGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGLLVPS 60 Query: 61 QGTVQVLDVTIRAGEKSPKLLPLRRRVGLVFQFPEQQMFEDTVEKDLCFGPLNFGMSPEE 120 QG+V+V D I + K+ + +R++VGLVFQF E Q+FE+TV KD+ FGP NFG+S E+ Sbjct: 61 QGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEED 120 Query: 121 AKERARQAMLEMGLDLGLLTRNPFRLSGGQMRKAAIASVLAMDPEIVVLDEPTATLDPVS 180 A + AR+ + +G+D L R+PF LSGGQMR+ AIA +LAM+P I+VLDEPTA LDP+ Sbjct: 121 AVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPAILVLDEPTAGLDPLG 180 Query: 181 RAELISQLERLCHEQGRTIIIVTHRMDELLPYADRWILLKDGEIAFQGSGGELAEEPDIL 240 R EL++ ++L H+ G TI++VTH MD++ YA++ +++ G + G ++ ++ + Sbjct: 181 RKELMTLFKKL-HQSGMTIVLVTHLMDDVAEYANQVYVMEKGRLVKGGKPSDVFQDVVFM 239 Query: 241 ARCGLGVPHSLRYWRGIADR 260 LGVP + + +ADR Sbjct: 240 EEVQLGVPKITAFCKRLADR 259 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,298,609 Number of extensions: 937769 Number of successful extensions: 8790 Number of sequences better than 1.0e-05: 2128 Number of HSP's gapped: 5811 Number of HSP's successfully gapped: 2337 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)