BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0016.p (326 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_gerCC [H] COG0142 Geranylgeranyl pyrophosphate synthase 206 4e-53 SA1302 [H] COG0142 Geranylgeranyl pyrophosphate synthase 188 8e-48 BH1653 [H] COG0142 Geranylgeranyl pyrophosphate synthase 170 4e-42 lin2790 [H] COG0142 Geranylgeranyl pyrophosphate synthase 169 4e-42 alr0096 [H] COG0142 Geranylgeranyl pyrophosphate synthase 160 2e-39 >BS_gerCC [H] COG0142 Geranylgeranyl pyrophosphate synthase Length = 348 Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 116/321 (36%), Positives = 188/321 (58%), Gaps = 15/321 (4%) Query: 7 LNIDLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGRKPST 66 LN D+D I E++ V D LL+++ L L +GGKR+RP+ V++ FG Sbjct: 38 LNDDIDVIERELEQTVRSDY-----PLLSEAGLHLLQAGGKRIRPVFVLLSGMFG-DYDI 91 Query: 67 RRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARVIELL 126 + ++ E IH ASL+HDD+IDDAELRRG P + K A++ G+YM A +E++ Sbjct: 92 NKIKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMM 151 Query: 127 SKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMATCLR 186 ++ K H + S ++CLGE +Q++ Y+ YL + + KTA+L+A + Sbjct: 152 TRINEPK---AHRILSQTIVEVCLGEIEQIKDKYNMEQNLRTYLRRIKRKTALLIAVSCQ 208 Query: 187 VGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQVTLPV 246 +GA+++ + E++ LY FG +GMS+QI DD+LDFT + + LGKP G DL G VTLPV Sbjct: 209 LGAIASGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPV 268 Query: 247 LFALQDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAIIQRLS 306 L+AL++P L ++ I + +E++ ++ I ++DA+ + VS+ YL +A Q+L+ Sbjct: 269 LYALKNPALKNQLKLINSETTQEQLEPIIEEIKKTDAIEASMAVSEMYLQKA---FQKLN 325 Query: 307 SYP---AHADLETLLQYFAGR 324 + P A + L + +Y R Sbjct: 326 TLPRGRARSSLAAIAKYIGKR 346 >SA1302 [H] COG0142 Geranylgeranyl pyrophosphate synthase Length = 319 Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 114/316 (36%), Positives = 177/316 (56%), Gaps = 7/316 (2%) Query: 14 INHEIQNIVAR-DKDVPKK-SLLAQSILELTSSGGKRLRPLMVIVGSRFGRKPST-RRTL 70 +N+EI+ + R +K + K S+L Q+ L L SSGGKR+RP VI+ S+FG+ T +T Sbjct: 6 MNNEIKKVEQRLEKAIKSKDSVLEQASLHLLSSGGKRVRPAFVILSSQFGKDEQTSEQTY 65 Query: 71 QLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARVIELLSKYT 130 Q++ A E IH A+L+HDD+ID ++ RRG + K +A+ GN++ A +E L Sbjct: 66 QVAVALELIHMATLVHDDVIDKSDKRRGKLTISKKWDQTTAILTGNFLLALGLEHL---M 122 Query: 131 GDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMATCLRVGAL 190 K+ VH L S + +C GE Q + ++ T YL + KTA+L+ VGA+ Sbjct: 123 AVKDNRVHQLISESIVDVCRGELFQFQDQFNSQQTIINYLRRINRKTALLIQISTEVGAI 182 Query: 191 SAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQVTLPVLFAL 250 +++S +E L G +GMSFQI DD+LDFT + LGKP GSDL NG +TLP+L + Sbjct: 183 TSQSDKETVRKLKMIGHYIGMSFQIIDDVLDFTSTEKKLGKPVGSDLLNGHITLPILLEM 242 Query: 251 -QDPELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAIIQRLSSYP 309 ++P+ I + S +E + +I +SD++ + VS YL +A +I L Sbjct: 243 RKNPDFKLKIEQLRRDSERKEFEECIQIIRKSDSIDEAKAVSSKYLSKALNLISELPDGH 302 Query: 310 AHADLETLLQYFAGRD 325 + L +L + R+ Sbjct: 303 PKSLLLSLTKKMGSRN 318 >BH1653 [H] COG0142 Geranylgeranyl pyrophosphate synthase Length = 323 Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 171/320 (53%), Gaps = 16/320 (5%) Query: 10 DLDEINHEIQNIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGRKPSTRRT 69 D+ I E++ V D+ +K+ + L +GGKR+RP+ V++ +FG Sbjct: 13 DIFTIERELEEAVQARHDILRKASV-----HLLKAGGKRIRPVFVLLAGKFGTY-DVNVL 66 Query: 70 LQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARVIELLSKY 129 ++ E IH ASL+HDD+IDDA+LRRG + ++ A++ G+YM A+ ++ + Y Sbjct: 67 KHIAVPLELIHMASLVHDDVIDDADLRRGKKTIKSQWDNRIAMYTGDYMFAKAVQT-ATY 125 Query: 130 TGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMATCLRVGA 189 D N +H + S A ++CLGE +Q+ Y+ N Y + + KTA+L+A ++GA Sbjct: 126 FDDPN--IHQIISNAINEMCLGEVEQIRDQYNPNQHLRIYFRRIKRKTALLIAVSCQLGA 183 Query: 190 LSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQVTLPVLFA 249 L+A++ + LY FG +GMSFQI DD+LDF + + LGKPAGSDL G VTLP L+A Sbjct: 184 LAAKADPAIVQKLYYFGYYVGMSFQITDDVLDFVGTEEQLGKPAGSDLLQGNVTLPALYA 243 Query: 250 L-QDPELAPVIRTI----GPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAAIIQR 304 L D +I + G S+ E V+A I S + +S YL +A ++ Sbjct: 244 LHHDMHAKRLIEQVLADRGNNSVHME--EVIAAIVSSGGIDYALSISDLYLKKAMRMLDH 301 Query: 305 LSSYPAHADLETLLQYFAGR 324 L L+ + Y R Sbjct: 302 LPDDEPKQFLQEIANYIGRR 321 >lin2790 [H] COG0142 Geranylgeranyl pyrophosphate synthase Length = 211 Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 0/325 (0%), Positives = 0/325 (0%), Gaps = 12/325 (3%) Query: 4 HEALNIDLDEINHEIQ-NIVARDKDVPKKSLLAQSILELTSSGGKRLRPLMVIVGSRFGR 62 L + E+ + + T + + V + Sbjct: 10 LTRLRENNPHPTTELNFSSPFELLIAVL------LSAQATDVSVNKATAKLYPVANTPAA 63 Query: 63 KPSTRRTLQLSAAAEFIHAASLIHDDIIDDAELRRGVPALHTKTGVLSAVHIGNYMSARV 122 + S + I L + G Sbjct: 64 MLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTAN 123 Query: 123 IELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQMEHAYDYNLTFDEYLEKSRNKTAMLMA 182 + L + + D + + L E + L+ Sbjct: 124 VVLNTAFGWPTIAV--DTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLIL 181 Query: 183 TCLRVGALSAESPEEVAGLLYDFGEALGMSFQIQDDLLDFTQSADVLGKPAGSDLRNGQV 242 Sbjct: 182 241 Query: 243 TLPVLFALQD--PELAPVIRTIGPASLEEEVAHVLALINRSDALFRTEEVSQDYLGQAAA 300 Sbjct: 242 - 300 Query: 301 IIQRLSSYPAHADLETLLQYFAGRD 325 Sbjct: 301 325 >alr0096 [H] COG0142 Geranylgeranyl pyrophosphate synthase Length = 359 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 13/293 (4%), Positives = 41/293 (13%), Gaps = 20/293 (6%) Query: 41 LTSSGGKRLRPLMVIVGSRF-----GRKPSTRRTLQLSAAAEFIHAASLIHDDIIDDAEL 95 R P G + + I Sbjct: 40 HGLLETARTLPDADAFGVARLEEALRLRAGGIT---KPVLLLEGFFDARDLPTISAQHFH 96 Query: 96 RRGVPALHTKTGVLSAVHIGNYMSARVIELLSKYTGDKNRYVHDLSSVATAQLCLGEYQQ 155 +++ + ++ + + R + C Q Sbjct: 97 TAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRL---GVRPEQAEAFYHRLTQCKNVRQP 153 Query: 156 MEHAYDYNLTFDEYLEKSRNKTAMLMATCLRVGALSAESPEEVAGLLYDFGEALGMSFQI 215 + + + + + A+ C + + L I Sbjct: 154 VNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGII 213 Query: 216 QDDLLDFTQSADVLGKPAGSDLRNGQVTLPVLFAL-QDPELAPVIRTIGPASLEEEVAHV 274 + + + + V +P Sbjct: 214 LYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWV--SERDTRLGVVA 271 Query: 275 LALINRSDALFRTEEVSQDYLGQAAAIIQRLSSYP---AHADLETLLQYFAGR 324 + + + + Sbjct: 272 MGYGDGYPRAAPSGTPVLVNGREV---PIVGRVAMDMICVDLGPQAQDKAGDP 321 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,591,463 Number of extensions: 880115 Number of successful extensions: 1943 Number of sequences better than 1.0e-05: 103 Number of HSP's gapped: 1729 Number of HSP's successfully gapped: 107 Length of query: 326 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 219 Effective length of database: 26,037,693 Effective search space: 5702254767 Effective search space used: 5702254767 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)