BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0006.p (134 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll4402 [J] COG0251 Putative translation initiation inhibitor, y... 151 3e-37 SPy0145 [J] COG0251 Putative translation initiation inhibitor, y... 151 3e-37 AGc3864 [J] COG0251 Putative translation initiation inhibitor, y... 151 3e-37 YER057c [J] COG0251 Putative translation initiation inhibitor, y... 151 3e-37 NMB1025 [J] COG0251 Putative translation initiation inhibitor, y... 151 3e-37 >mll4402 [J] COG0251 Putative translation initiation inhibitor, yjgF family Length = 141 Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 1 LYSKQEENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQAR 60 Y + + K +ATE AP AIGPY Q V GN + TSGQ+ +NP+TG + V QAR Sbjct: 5 FYRCNKGEIMSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQAR 64 Query: 61 QSLSNVKAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTE---PYPARSAVEVA 117 QSL NVKAI+E AG + +VKTTV++KD+NDFA VN Y +FFTE +PARS VEVA Sbjct: 65 QSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVA 124 Query: 118 RLPKDGLVEIEAVARKK 134 RLPKD +EIEA+A ++ Sbjct: 125 RLPKDVKIEIEAIAVRR 141 >SPy0145 [J] COG0251 Putative translation initiation inhibitor, yjgF family Length = 141 Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 1 LYSKQEENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQAR 60 Y + + K +ATE AP AIGPY Q V GN + TSGQ+ +NP+TG + V QAR Sbjct: 5 FYRCNKGEIMSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQAR 64 Query: 61 QSLSNVKAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTE---PYPARSAVEVA 117 QSL NVKAI+E AG + +VKTTV++KD+NDFA VN Y +FFTE +PARS VEVA Sbjct: 65 QSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVA 124 Query: 118 RLPKDGLVEIEAVARKK 134 RLPKD +EIEA+A ++ Sbjct: 125 RLPKDVKIEIEAIAVRR 141 >AGc3864 [J] COG0251 Putative translation initiation inhibitor, yjgF family Length = 141 Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 1 LYSKQEENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQAR 60 Y + + K +ATE AP AIGPY Q V GN + TSGQ+ +NP+TG + V QAR Sbjct: 5 FYRCNKGEIMSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQAR 64 Query: 61 QSLSNVKAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTE---PYPARSAVEVA 117 QSL NVKAI+E AG + +VKTTV++KD+NDFA VN Y +FFTE +PARS VEVA Sbjct: 65 QSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVA 124 Query: 118 RLPKDGLVEIEAVARKK 134 RLPKD +EIEA+A ++ Sbjct: 125 RLPKDVKIEIEAIAVRR 141 >YER057c [J] COG0251 Putative translation initiation inhibitor, yjgF family Length = 129 Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 0/137 (0%), Positives = 0/137 (0%), Gaps = 3/137 (2%) Query: 1 LYSKQEENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQAR 60 L E+ + A + G + ++ Sbjct: 5 LTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNVL 64 Query: 61 QSLSNVKAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTE---PYPARSAVEVA 117 ++ ++ + + L + + + ++ S P +E Sbjct: 65 EASNSSLDRVVKVNIFLADINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAI 124 Query: 118 RLPKDGLVEIEAVARKK 134 Sbjct: 125 141 >NMB1025 [J] COG0251 Putative translation initiation inhibitor, yjgF family Length = 141 Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 75/137 (54%), Positives = 95/137 (69%), Gaps = 3/137 (2%) Query: 1 LYSKQEENMSKKQVATEKAPGAIGPYSQAVIAGNWVYTSGQLGLNPETGTLAEGVVEQAR 60 Y + + K +ATE AP AIGPY Q V GN + TSGQ+ +NP+TG + V QAR Sbjct: 5 FYRCNKGEIMSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVAAQAR 64 Query: 61 QSLSNVKAILEEAGASLEHVVKTTVYLKDMNDFAAVNEVYSSFFTE---PYPARSAVEVA 117 QSL NVKAI+E AG + +VKTTV++KD+NDFA VN Y +FFTE +PARS VEVA Sbjct: 65 QSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVA 124 Query: 118 RLPKDGLVEIEAVARKK 134 RLPKD +EIEA+A ++ Sbjct: 125 RLPKDVKIEIEAIAVRR 141 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.309 0.126 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 9,303,793 Number of extensions: 361264 Number of successful extensions: 959 Number of sequences better than 1.0e-05: 175 Number of HSP's gapped: 830 Number of HSP's successfully gapped: 175 Length of query: 134 Length of database: 38,378,431 Length adjustment: 95 Effective length of query: 39 Effective length of database: 27,421,701 Effective search space: 1069446339 Effective search space used: 1069446339 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 110 (47.0 bits)