BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0017.p
         (185 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yvaV [K] COG1510 Predicted transcriptional regulators              123   2e-28
BS_yvbF [K] COG1510 Predicted transcriptional regulators              120   1e-27
BS_yuaC [K] COG1510 Predicted transcriptional regulators              117   1e-26

>BS_yvaV [K] COG1510 Predicted transcriptional regulators
          Length = 180

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 102/171 (59%), Gaps = 5/171 (2%)

Query: 15  ISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSMSTGVR 74
           I +A +  I+ I +NM  +G+  ++G + G +Y N+ P+TL ELS   GMSKT MS  VR
Sbjct: 12  IEQAEDHFIERIAENMHAFGMPSTVGRVLGIIYMNRKPMTLTELSEATGMSKTRMSQVVR 71

Query: 75  TLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALSKSLNEIRQM 134
            +LD  + +KV+ KG RKDL+EV  D++Q F   FS  W K V  N   + K LN  R++
Sbjct: 72  EMLDANIAEKVFEKGVRKDLYEVEQDYYQTFITLFSATWSKVVSKN-KMMHKKLN--REL 128

Query: 135 KSDYADE--PGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPK 183
            S   +E  P  E+ +N    +++E + YY WL +LIE  E+  IF+ +PK
Sbjct: 129 LSVLDEELTPEAEEKVNELLKELKEWLDYYNWLSRLIEFFESEDIFKYVPK 179


>BS_yvbF [K] COG1510 Predicted transcriptional regulators
          Length = 185

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 102/173 (58%), Gaps = 8/173 (4%)

Query: 15  ISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSMSTGVR 74
           I  A E +I+ I +NM  +G+  ++G + G +Y N+ P+TL ELS   GMSKT MS  VR
Sbjct: 9   IEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVR 68

Query: 75  TLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGN---MSALSKSLNEI 131
            ++D  + +KV+ KG RKDL++V  D++Q F   F+  W K V  N      L++ L+++
Sbjct: 69  EMIDANIAEKVFEKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDL 128

Query: 132 RQMKSDYAD-EPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPK 183
            Q      + E  V QLLN    +++E + YY WL +LIE  E+ ++F  +PK
Sbjct: 129 LQRDGLTPEAEEKVNQLLN----ELKEWLHYYDWLSRLIEFFESEEVFRYVPK 177


>BS_yuaC [K] COG1510 Predicted transcriptional regulators
          Length = 180

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 112/173 (64%), Gaps = 5/173 (2%)

Query: 15  ISKARERVIDSIGKNMDLYGITLSIGHLYGYMYFNQGPVTLDELSRTMGMSKTSMSTGVR 74
           I +AR+ VIDSI + MDLYGIT S+G LYG MY  +  +TLDE+   + MSK SMSTGV+
Sbjct: 10  IEQARDLVIDSIAETMDLYGITRSVGILYGTMYM-RDEMTLDEMREELQMSKPSMSTGVK 68

Query: 75  TLLDLKMIDKVWGKGTRKDLFEVVPDWHQNFSDYFSIKWRKAVEGNMSALSKSLNEIRQM 134
            L DL ++ K + +G RK  F    D+ + F+++F  KW + V+ N++A+ ++  +++++
Sbjct: 69  KLQDLNVVKKTFHRGIRKHTFVAEKDFFKFFTNFFPPKWEREVQVNVTAIEEAQADLQKV 128

Query: 135 --KSDYADEPGVEQLLNTDEVKIEEAIKYYRWLLKLIEALETGKIFELIPKES 185
             K D  ++   E L   D+  +E +  YY WL +L E+++TG+IF+ IP E+
Sbjct: 129 LCKEDLDEDIKNEALQLYDQ--LESSKAYYDWLKRLAESVQTGEIFKFIPVET 179


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,724,867
Number of extensions: 513975
Number of successful extensions: 1238
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 4
Length of query: 185
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 85
Effective length of database: 26,845,031
Effective search space: 2281827635
Effective search space used: 2281827635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)