BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0013.p (336 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0764 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 426 e-119 BS_yhfB [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 387 e-107 XF1817 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 276 4e-74 BH2883 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 274 1e-73 CAC3578 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 265 5e-71 >BH0764 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 332 Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/326 (61%), Positives = 257/326 (78%), Gaps = 1/326 (0%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 A+ITAIG+YVP RRLTN DLE+MVDTNDEWIV+RTGIRERRI+ +DE+TSD+ AV DL Sbjct: 6 ARITAIGSYVPERRLTNDDLEKMVDTNDEWIVKRTGIRERRIAADDEFTSDIGYKAVQDL 65 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 + RY KS+ DVDMI+V T TPDF PS AS++Q +LGI T GAID++AACAGF Y LH Sbjct: 66 IARYEKSVDDVDMIIVCTFTPDFKTPSAASLIQAKLGIQNT-GAIDLNAACAGFTYGLHM 124 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A+ ++SGLHRK+LV+GA+ +SK+TDYTDR+TCILFGDGAGAVLVE E F F+LG Sbjct: 125 ANGLISSGLHRKILVIGAETISKVTDYTDRTTCILFGDGAGAVLVEYDENEPSFVSFNLG 184 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGLD 243 S+G A+ +Y TGL+ ++N EL +TG LVQ+GREV++WAV TVP G++ VL A + + Sbjct: 185 SEGERANKLYCTGLAEQMNGEELVNTGNLVQSGREVYKWAVNTVPAGMKAVLEKAAMKRN 244 Query: 244 QVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVNG 303 ++DWF+PHSANLRMIE IC++ P EQ LYSL +GNTS+A+IPLALD+GVREGK+ +G Sbjct: 245 EIDWFVPHSANLRMIESICDKSGIPLEQTLYSLVQYGNTSSATIPLALDIGVREGKLKHG 304 Query: 304 QQILLYGFGAGLTQAGQLVKLELAPE 329 +LLYGFG GL AG +++ + E Sbjct: 305 DNVLLYGFGGGLAHAGLILRWTVPTE 330 >BS_yhfB [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 211 Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust. Identities = 0/323 (0%), Positives = 0/323 (0%), Gaps = 1/323 (0%) Query: 1 LKGAKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAV 60 + AK I + + + I + +S A Sbjct: 1 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT 60 Query: 61 LDLMKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYA 120 M G + + + + V Sbjct: 61 PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEV-PEDRAALEALPGVGR 119 Query: 121 LHTAHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGF 180 + + V + + +V + ++D Sbjct: 120 KTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWL 179 Query: 181 HLGSDGSGAHHVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGI 240 Sbjct: 180 239 Query: 241 GLDQVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKV 300 Sbjct: 240 299 Query: 301 VNGQQILLYGFGAGLTQAGQLVK 323 Sbjct: 300 322 >XF1817 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 324 Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 146/321 (45%), Positives = 204/321 (63%), Gaps = 5/321 (1%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 A+I G Y+P + LTN DL +VDT+DEWI RTGIRER I+ E E TSDL A + Sbjct: 7 ARIAGTGGYLPEKVLTNDDLAHIVDTSDEWIRTRTGIRERHIAAEGETTSDLAYEAAICA 66 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 ++ D+D+I+V T+TPD FPS A +LQ RLG GA D++AAC+GFVYAL Sbjct: 67 LEAAEVRSADLDLIVVGTTTPDLIFPSTACLLQARLG-AVGCGAFDVNAACSGFVYALSV 125 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 A +V+SG + VLV+GAD L++I D++DR+TC+LFGDGAGAV++++ E G HL Sbjct: 126 AEKFVSSGCSKTVLVVGADTLTRIIDWSDRTTCVLFGDGAGAVVLKADEDT-GILSTHLH 184 Query: 184 SDGSGAHHVYR-TGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNAGIGL 242 +DGS ++ G+S V E D G L+ G EVF++AV+ + + V + L + Sbjct: 185 ADGSKKELLWDPVGVS--VGFGEGKDCGALLMKGNEVFKYAVKALDRVVDETLEANHLDK 242 Query: 243 DQVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVN 302 ++DW IPH ANLR+IE RL+ +Q + +++ GNTS AS+PLALD +R G+V Sbjct: 243 HELDWLIPHQANLRIIEATARRLDMSMDQVVVTVDRHGNTSTASVPLALDEAIRSGRVQR 302 Query: 303 GQQILLYGFGAGLTQAGQLVK 323 GQ +LL FG G T L++ Sbjct: 303 GQLLLLEAFGGGFTWGSALLR 323 >BH2883 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 312 Score = 274 bits (701), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/313 (44%), Positives = 205/313 (65%), Gaps = 16/313 (5%) Query: 4 AKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAVLDL 63 A I IG+YV +TN D E+ +DT+DEWI RTGI ERR + ++ TSD+ A + Sbjct: 4 AGILGIGSYVGEHVVTNKDFEKRIDTSDEWIRTRTGIEERRFAPDNVDTSDMAYEASVKA 63 Query: 64 MKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYALHT 123 +K G S ++D+ILVAT TPD PFP+V++++Q RLG A A+D+SAACAGF+Y L T Sbjct: 64 LKAAGVSAEEIDLILVATVTPDMPFPTVSTLVQQRLG-AKKAAAMDISAACAGFIYGLAT 122 Query: 124 AHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGFHLG 183 ++ +G ++ VLV+G + LSKITD TDR+T +LFGDGAGA ++ + + G + LG Sbjct: 123 GQQFIENGGYKHVLVIGVEKLSKITDMTDRNTAVLFGDGAGAAVMGAVSEDRGILAYELG 182 Query: 184 SDGSGAHHVYRTGLSHRVNEVELSDTGKLVQ-NGREVFRWAVRTVPQGVQQVLNNAGIGL 242 +DG GA H+ + G+ +Q NGREVF++AVR + + VL AG+ Sbjct: 183 ADGEGAMHI--------------NQKGEYIQMNGREVFKFAVRQMGESALSVLEKAGLSK 228 Query: 243 DQVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREGKVVN 302 + VD+ IPH AN+R++E ERL P E+ +++ +GNTS+ASIP+A+ +++GK+ + Sbjct: 229 EDVDFLIPHQANIRIMEASRERLELPVEKMSTTVKKYGNTSSASIPMAMVDELKDGKIKD 288 Query: 303 GQQILLYGFGAGL 315 G ++L GFGAGL Sbjct: 289 GDLLVLVGFGAGL 301 >CAC3578 [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 325 Score = 265 bits (678), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 131/325 (40%), Positives = 214/325 (65%), Gaps = 5/325 (1%) Query: 1 LKGAKITAIGAYVPARRLTNSDLEQMVDTNDEWIVQRTGIRERRISREDEYTSDLCAAAV 60 + +I G+YVP + +TN D+ ++VDT+DEWI RTGI+ERRIS +E TSDL A A Sbjct: 1 MNSVEIIGTGSYVPEKIVTNEDMSKIVDTSDEWISSRTGIKERRISI-NENTSDLGAKAA 59 Query: 61 LDLMKRYGKSMHDVDMILVATSTPDFPFPSVASILQNRLGIPATAGAIDMSAACAGFVYA 120 L ++ ++D+I+VAT++PD PSVA I+Q ++G A D++AAC GF++A Sbjct: 60 LRAIEDSNIKPEEIDLIIVATTSPDSYTPSVACIVQEKIG-AKNAACFDLNAACTGFIFA 118 Query: 121 LHTAHAYVASGLHRKVLVLGADALSKITDYTDRSTCILFGDGAGAVLVESGEQLDGFAGF 180 L+TA ++ +G ++ LV+G + LSKI D+ DR TC+LFGDGAGAV++ G++ +G Sbjct: 119 LNTASQFIKTGEYKTALVVGTEVLSKILDWQDRGTCVLFGDGAGAVIIRGGDE-NGIIKA 177 Query: 181 HLGSDGSGAH--HVYRTGLSHRVNEVELSDTGKLVQNGREVFRWAVRTVPQGVQQVLNNA 238 LGSDG+G H T + + ++ + + K+ NGREVF++AV+ + V++V+ ++ Sbjct: 178 CLGSDGTGKDFLHCPATNVINPFSDEKGLASSKISMNGREVFKFAVKVMVSSVKKVIEDS 237 Query: 239 GIGLDQVDWFIPHSANLRMIEPICERLNYPFEQALYSLEYFGNTSAASIPLALDLGVREG 298 G+ ++ +D+ +PH AN+R+IE ++L ++ +L+ +GNTS A+IPLA+D ++G Sbjct: 238 GLNIEDIDYIVPHQANIRIIEFAAKKLGLSMDKFFINLQNYGNTSGATIPLAIDEMNKKG 297 Query: 299 KVVNGQQILLYGFGAGLTQAGQLVK 323 + G +I++ GFG GLT ++K Sbjct: 298 LLKRGAKIVVVGFGGGLTWGSMVLK 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,954,648 Number of extensions: 1180099 Number of successful extensions: 3240 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 3161 Number of HSP's successfully gapped: 39 Length of query: 336 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 229 Effective length of database: 26,037,693 Effective search space: 5962631697 Effective search space used: 5962631697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)