BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0011.p (322 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0790 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 308 1e-83 SPy0385 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 200 3e-51 SA2079 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, p... 187 2e-47 BS_fhuD [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 167 2e-41 BS_yxeB [P] COG0614 ABC-type Fe3+-hydroxamate transport system, ... 141 1e-33 >CAC0790 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 307 Score = 308 bits (788), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 146/268 (54%), Positives = 199/268 (74%) Query: 54 FTYESENGPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAV 113 TY+SENGP++VP +P+R+V L +G++M LG +VGV++ S NP +++ LK+ V Sbjct: 37 ITYKSENGPIKVPAHPKRIVALNGSTSGDIMKLGGNIVGVEKYSMANPLYKKYLKNATVV 96 Query: 114 SDESLEKIIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKE 173 SDE LEKIIEL+PDLII S KN+DK +IAPTV+YTYNK+ YL +++GKL+NK+K+ Sbjct: 97 SDEDLEKIIELKPDLIIAGSTDKNLDKLSKIAPTVSYTYNKLGYLDQVIEIGKLINKKKQ 156 Query: 174 AQAWVDDFKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLG 233 AQ WV++FK R AGE+I+ KIG +TV+++ NKQLYV+G N+GRG+E+LY A L Sbjct: 157 AQEWVNNFKKRASDAGEKIKNKIGNNSTVTILGGDNKQLYVFGSNWGRGSEILYQAMGLK 216 Query: 234 MPEKVKEGTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVF 293 MP KV GY +S+EVL Y+GDY+I+ K++ DNSFQNTD YK+IPAV+NN V Sbjct: 217 MPAKVTANALKPGYYVISSEVLPQYIGDYLIYIKDSAADNSFQNTDTYKNIPAVKNNRVL 276 Query: 294 EADAKAFYFNDPLSLEYQLEFFEHSFLG 321 E DA FYFNDP+SL+Y+L+ F + FLG Sbjct: 277 EVDANKFYFNDPISLDYELDTFINYFLG 304 >SPy0385 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 310 Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 102/261 (39%), Positives = 161/261 (61%), Gaps = 5/261 (1%) Query: 64 EVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVSDESLEKIIE 123 ++PK P+RVV L TG + L + +VGV K NP + +K + V+ LE + Sbjct: 49 DIPKQPKRVVSLASTYTGYLKKLDMNLVGVTSYDKKNPILAKTVKKAKQVAATDLEAVTT 108 Query: 124 LQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKEAQAWVDDFKA 183 L+PDLI+ S +NI + +IAP ++ Y K DYL + G++ NKE +A+ W+ D+K Sbjct: 109 LKPDLIVVGSTEENIKQLAEIAPVISIEYRKRDYLQVLSDFGRIFNKEDKAKKWLKDWKT 168 Query: 184 RTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLGMPEKVKEGTK 243 +T +E++A G +AT +++ + K +Y++G ++GRG E+++ AF PEKVK Sbjct: 169 KTAAYEKEVKAVTGDKATFTIMGLYEKDVYLFGKDWGRGGEIIHQAFHYDAPEKVKTEVF 228 Query: 244 TDGYLAVSTEVLKDYLGDYVIFSKNAEED---NSFQNTDIYKSIPAVQNNHVFEADAKAF 300 GYL++S EVL DY+GDYV+ + AE+D ++ + +++SIPAV+ +HV + +A F Sbjct: 229 KQGYLSLSQEVLPDYIGDYVVVA--AEDDKTGSALYESKLWQSIPAVKKHHVIKVNANVF 286 Query: 301 YFNDPLSLEYQLEFFEHSFLG 321 YF DPLSLEYQLE + L Sbjct: 287 YFTDPLSLEYQLETLREAILS 307 >SA2079 [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 302 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 165/267 (61%), Gaps = 1/267 (0%) Query: 55 TYESENGP-VEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAV 113 +Y+ ++G V++PK+P+R+ V+ G + LG +V V++ + ++K K V + Sbjct: 32 SYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAVNQQVDQSKVLKDKFKGVTKI 91 Query: 114 SDESLEKIIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKEKE 173 D +EK+ + +PDLII S K+I K++++APTV YNK YL Q +GK++ KE + Sbjct: 92 GDGDVEKVAKEKPDLIIVYSTDKDIKKYQKVAPTVVVDYNKHKYLEQQEMLGKIVGKEDK 151 Query: 174 AQAWVDDFKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFKLG 233 +AW D++ T K G+EI+ IG++ATVS+ + F+K+LY YG N+GRG E+LY AF L Sbjct: 152 VKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLK 211 Query: 234 MPEKVKEGTKTDGYLAVSTEVLKDYLGDYVIFSKNAEEDNSFQNTDIYKSIPAVQNNHVF 293 M + ++ T G+ V E ++ Y GDY++ + + +++T+++K++ A + H+ Sbjct: 212 MQPEQQKLTAKAGWAEVKQEEIEKYAGDYIVSTSEGKPTPGYESTNMWKNLKATKEGHIV 271 Query: 294 EADAKAFYFNDPLSLEYQLEFFEHSFL 320 + DA +++NDP +L++ + + + Sbjct: 272 KVDAGTYWYNDPYTLDFMRKDLKEKLI 298 >BS_fhuD [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 315 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/272 (36%), Positives = 158/272 (58%), Gaps = 7/272 (2%) Query: 54 FTYESENGPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAV 113 FTY++ENG V++PK+P+RVVV+ G LG+ VVG E NP ++ K VE + Sbjct: 43 FTYKAENGNVKIPKHPKRVVVMADGYYGYFKTLGINVVGAPENVFKNPYYKGKTNGVENI 102 Query: 114 SD-ESLEKIIELQPDLII-GLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQVGKLLNKE 171 D S+EK+I+L PDLII + +I K ++IAPTV Y+K+D + + K+ E Sbjct: 103 GDGTSVEKVIDLNPDLIIVWTTQGADIKKLEKIAPTVAVKYDKLDNIEQLKEFAKMTGTE 162 Query: 172 KEAQAWVDDFKARTEKAGEEIRAKIGKEATVSVIETFNKQLYVYGYNFGRGTELLYGAFK 231 +A+ W+ + + A +I+ +G + T+S+++T K +YV+G +FGRG ++Y Sbjct: 163 DKAEKWLAKWDKKVAAAKTKIKKAVG-DKTISIMQTNGKDIYVFGKDFGRGGSIIYKDLG 221 Query: 232 LGMPEKVKEGT--KTDGYLAVSTEVLKDYLGDYVIFS--KNAEEDNSFQNTDIYKSIPAV 287 L + KE + GY ++S E L D+ GDY+ ++ +D + I+K++ AV Sbjct: 222 LQATKLTKEKAIDQGPGYTSISLEKLPDFAGDYIFAGPWQSGGDDGGVFESSIWKNLNAV 281 Query: 288 QNNHVFEADAKAFYFNDPLSLEYQLEFFEHSF 319 +N HV++ D FYF DP+SLE QLEF S Sbjct: 282 KNGHVYKMDPIGFYFTDPISLEGQLEFITESL 313 >BS_yxeB [P] COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component Length = 319 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 158/270 (58%), Gaps = 12/270 (4%) Query: 55 TYESENGPVEVPKNPQRVVVLTRFLTGNVMALGVPVVGVDEMSKTNPRFEEKLKDVEAVS 114 TY+S G V +P +P+R+V T F G ++++G VVG S NP + KLK+V+ V Sbjct: 42 TYKSPKGNVNIPAHPKRIV--TDFYAGELLSVGANVVGSGSWSFDNPFLKSKLKNVKDVG 99 Query: 115 DE-SLEKIIELQPDLIIGLSDIKNIDKFKQIAPTVTYTYNKVDYLTLQLQV-GKLLNKEK 172 D S+EK++ELQPDLI+ +++ +N+DK K+IAPTV YN + + + G + + Sbjct: 100 DPISVEKVMELQPDLIVVMNE-ENVDKLKKIAPTVVIPYNTAKNVEDTVSMFGDIAGAKD 158 Query: 173 EAQAWVDDFKARTEKAGEEIRAKIGKEATVSVIETFNK-QLYVYGYNFGRGTELLYGAFK 231 +A++++ DF + E A ++I I K+AT + E +K + +V+ N GRG + +Y A Sbjct: 159 QAKSFMADFNKKAEAAKKKIAGVIDKDATFGIYENTDKGEFWVFNDNGGRGGQAVYNALG 218 Query: 232 LGMPEKVKEGTKTDGYL-AVSTEVLKDYLGDYVIFSKNAEEDNS-----FQNTDIYKSIP 285 L PEK+++ G + +S EV+ +Y DY+ + + S +N+ I+K++ Sbjct: 219 LKAPEKIEQDVIKKGEMKQLSQEVIPEYAADYMFITDYNPKGESKTLDKLENSSIWKNLD 278 Query: 286 AVQNNHVFEADAKAFYFNDPLSLEYQLEFF 315 AV++N VF D +FY DP+S+ Q++ Sbjct: 279 AVKHNRVFINDFDSFYPYDPISVSKQVDII 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,671,716 Number of extensions: 886836 Number of successful extensions: 2111 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 2082 Number of HSP's successfully gapped: 33 Length of query: 322 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 216 Effective length of database: 26,153,027 Effective search space: 5649053832 Effective search space used: 5649053832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)